| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4146 |
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| Symbol | |
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| ID | 4024668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4616064 |
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| End bp | 4618397 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637964354 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_571266 |
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| Protein GI | 91978607 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACTGG CGGCACAAGA CGGGACCACC GAGCAGAAAA TGTCGCGCTC GATCTATGCT
GCGCTTGTTG ATTCGCTGTT CCAGAATCCT GCGCCGATGT TCGCTGGCGC CCTGTCGGCT
GCCGTCGCCG CGGTCATGAC CGCGCTCAAG ACCGGGAACC ATCTGCTGTG GATCTGCGCC
CTGTTGCTGA TTGCGACCGG TGCACTACGT TCAATTGATA TGCACAATTA TCAACGTCGA
AAAGGGACGT TGACGCCGGA CGACGCCCAG CGTTGGGAAA TGCGATATCA GATCGGCGCA
ATGCTCTACG CAGCGGCGCT CGGCTTCTGG TGCGTGATCG CCTTGATCGG GACGGATGAC
CCGGTGGCGC ATATGATCTG CACGTGCGTC ACCTTGAGCT ATATGGCAGC CGGCGCCGGC
CGAACCTACG GCCGGCCGTG GATATTCCAT CTGCAGATAT TGCTCGCCTG CGGCTCGATG
TCCGCCGCCT TGGCTTGGCA TGGAAATATC TACTATGCCG GCCTCGCGTT GCTGAACGTC
GTGTTTTTCG TCGGCGTCAA GCACATCACA ACCAGCCTGC AACAGATCTT TGTACGCGCG
CTGCTCGGCC GCGAACGCGA ATCCGCTCTG GCGGCCCAGT TCGATACCGC CCTGAACAAC
ATGCCGCACG GTCTGTGCAT GTTCGGCCCC GATGGGCGAC TGGCGGTGAT GAATCATCGC
TTTACCGAAA TGATGAAACT GCGTGACAGC CTCGTTAAAA ATGCGCCGAC CGCGACCGAG
ATTGTCGCCG CCTGCGTTTC GATCGGCGCC ATCTCGGCGT CGAGCGGCAG ATTGATTCTG
TCGGAGGTCG ACAATTCGCT GGCCGGCGAG ATCGTGACCG TCGGCGACGA GTCGACGCCA
CGATCGTTGT CCTGGACGTT CCAGCCGATG GCCGGCGGCG GCACCGTCGT GCTGGTTGAG
GACATCACCG AGCGGCGAAA CGCCGAGGCG CGGATCATCC ATCTGGCGCG CTACGACGAA
CTCACCGGCT TACCCAACCG AGTCAATTTC CACGACGAGA TCGAACGAAT TCTGACGGCT
TCGCAGGGTC AGAACAAAGC GGCTCTCTCT GCGCTGCTGT TCATCGATCT CGATCAGTTC
AAGCAGGTCA ATGATACGCT CGGTCACCCC TGCGGCGACC GGCTGCTGTG CGCGGTCGCC
GACCGTTTGC GTGACATGCT GCGCCCGGAG GACTTCGTCG CGCGGTTCGG CGGCGACGAA
TTCGTCGTGT TTCAGCAGAA TATTCGGTCG AACGAGGACG CCGCGGTGCT GGCGCGCAGG
ATCGTCGATC GACTGAGCGA CCGCTATCTG ATCGACCATC ACGTCGTCGA GATCGGCGCC
TCGATCGGAA TCGCGCTGAC TGCGCCGGCC ACCCGCGCCG ACATCCTGCT GAAGAACGCC
GACATGGCGC TGTATCGCGC CAAGGCCGAT GGCCGTGGCA CCTATTGCTT CTTCCGCGAA
GAGATGGCGA AAACCGTCGA GGCGCGCCGC ATCCTTGAAC TCGACCTGCG CAAGGCGCTC
GCCAACGAGG AATTCGAGCT CTATTTCCAG CCCCTGGTCA ACCTGAAGAC CGGCCGGATT
GCGACCTGTG AGGCGTTGTT GCGCTGGAAT CATCCGGTGC GCGGGACGGT CTCGCCGGTC
GACATCATCC CGGTGGCCGA GGAAATGGGG CTGATCGTCG ATCTCGGCCG CTGGATCCTG
CGCAAGGCCT GCATGGAATG CATGATGTGG CCGGAGCAAG TCAGTGTCGC GGTCAATTTC
TCCTCGCAAC AGTTCCATCA GCGCGACGTG ATCAACGAGG TGCGCTATGC GCTCGAGGTC
TCGGGCCTGC CGGCCAGCCG TCTCGAAATC GAGATTACCG AATCGTCGCT GCTGCGGAAC
ACGCAGTTCA CCCACGACGC GCTGGAGCAA TTGCATGCCG AGGGTGTGCG GATCTCGCTC
GACGATTTCG GCACGGGGTA TTCCAGCCTT AGCTATCTGC ACAGTTTCCC GTTGCAGAAG
GTCAAGATCG ATCGGTCTTT CCTCGAGGGC ATCGACAGCG ATCGGCCGCT GACCCTGCTG
CACGGCGTTG CACGGTTGAG CGCCGATCTC GGTATGGCCG TGGTCGTCGA GGGCATCGAG
ACCAACGAAC AGCTCGAACG GATCAACTCC GAAGGCACCG TGACCGAAGG GCAGGGATAT
CTGTTCAGTC GTCCGGTCCC CGCATCGCGA ATCCGCCAGC TACTCGCGGC TTCGCACGGC
AATCGACAGA CGGACGGCGA GCCTCTGGTG CTGCCGTTTC GCTCGATCGC TTGA
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| Protein sequence | MQLAAQDGTT EQKMSRSIYA ALVDSLFQNP APMFAGALSA AVAAVMTALK TGNHLLWICA
LLLIATGALR SIDMHNYQRR KGTLTPDDAQ RWEMRYQIGA MLYAAALGFW CVIALIGTDD
PVAHMICTCV TLSYMAAGAG RTYGRPWIFH LQILLACGSM SAALAWHGNI YYAGLALLNV
VFFVGVKHIT TSLQQIFVRA LLGRERESAL AAQFDTALNN MPHGLCMFGP DGRLAVMNHR
FTEMMKLRDS LVKNAPTATE IVAACVSIGA ISASSGRLIL SEVDNSLAGE IVTVGDESTP
RSLSWTFQPM AGGGTVVLVE DITERRNAEA RIIHLARYDE LTGLPNRVNF HDEIERILTA
SQGQNKAALS ALLFIDLDQF KQVNDTLGHP CGDRLLCAVA DRLRDMLRPE DFVARFGGDE
FVVFQQNIRS NEDAAVLARR IVDRLSDRYL IDHHVVEIGA SIGIALTAPA TRADILLKNA
DMALYRAKAD GRGTYCFFRE EMAKTVEARR ILELDLRKAL ANEEFELYFQ PLVNLKTGRI
ATCEALLRWN HPVRGTVSPV DIIPVAEEMG LIVDLGRWIL RKACMECMMW PEQVSVAVNF
SSQQFHQRDV INEVRYALEV SGLPASRLEI EITESSLLRN TQFTHDALEQ LHAEGVRISL
DDFGTGYSSL SYLHSFPLQK VKIDRSFLEG IDSDRPLTLL HGVARLSADL GMAVVVEGIE
TNEQLERINS EGTVTEGQGY LFSRPVPASR IRQLLAASHG NRQTDGEPLV LPFRSIA
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