Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4146 |
Symbol | |
ID | 4024668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4616064 |
End bp | 4618397 |
Gene Length | 2334 bp |
Protein Length | 777 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637964354 |
Product | GGDEF domain-containing protein |
Protein accession | YP_571266 |
Protein GI | 91978607 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAACTGG CGGCACAAGA CGGGACCACC GAGCAGAAAA TGTCGCGCTC GATCTATGCT GCGCTTGTTG ATTCGCTGTT CCAGAATCCT GCGCCGATGT TCGCTGGCGC CCTGTCGGCT GCCGTCGCCG CGGTCATGAC CGCGCTCAAG ACCGGGAACC ATCTGCTGTG GATCTGCGCC CTGTTGCTGA TTGCGACCGG TGCACTACGT TCAATTGATA TGCACAATTA TCAACGTCGA AAAGGGACGT TGACGCCGGA CGACGCCCAG CGTTGGGAAA TGCGATATCA GATCGGCGCA ATGCTCTACG CAGCGGCGCT CGGCTTCTGG TGCGTGATCG CCTTGATCGG GACGGATGAC CCGGTGGCGC ATATGATCTG CACGTGCGTC ACCTTGAGCT ATATGGCAGC CGGCGCCGGC CGAACCTACG GCCGGCCGTG GATATTCCAT CTGCAGATAT TGCTCGCCTG CGGCTCGATG TCCGCCGCCT TGGCTTGGCA TGGAAATATC TACTATGCCG GCCTCGCGTT GCTGAACGTC GTGTTTTTCG TCGGCGTCAA GCACATCACA ACCAGCCTGC AACAGATCTT TGTACGCGCG CTGCTCGGCC GCGAACGCGA ATCCGCTCTG GCGGCCCAGT TCGATACCGC CCTGAACAAC ATGCCGCACG GTCTGTGCAT GTTCGGCCCC GATGGGCGAC TGGCGGTGAT GAATCATCGC TTTACCGAAA TGATGAAACT GCGTGACAGC CTCGTTAAAA ATGCGCCGAC CGCGACCGAG ATTGTCGCCG CCTGCGTTTC GATCGGCGCC ATCTCGGCGT CGAGCGGCAG ATTGATTCTG TCGGAGGTCG ACAATTCGCT GGCCGGCGAG ATCGTGACCG TCGGCGACGA GTCGACGCCA CGATCGTTGT CCTGGACGTT CCAGCCGATG GCCGGCGGCG GCACCGTCGT GCTGGTTGAG GACATCACCG AGCGGCGAAA CGCCGAGGCG CGGATCATCC ATCTGGCGCG CTACGACGAA CTCACCGGCT TACCCAACCG AGTCAATTTC CACGACGAGA TCGAACGAAT TCTGACGGCT TCGCAGGGTC AGAACAAAGC GGCTCTCTCT GCGCTGCTGT TCATCGATCT CGATCAGTTC AAGCAGGTCA ATGATACGCT CGGTCACCCC TGCGGCGACC GGCTGCTGTG CGCGGTCGCC GACCGTTTGC GTGACATGCT GCGCCCGGAG GACTTCGTCG CGCGGTTCGG CGGCGACGAA TTCGTCGTGT TTCAGCAGAA TATTCGGTCG AACGAGGACG CCGCGGTGCT GGCGCGCAGG ATCGTCGATC GACTGAGCGA CCGCTATCTG ATCGACCATC ACGTCGTCGA GATCGGCGCC TCGATCGGAA TCGCGCTGAC TGCGCCGGCC ACCCGCGCCG ACATCCTGCT GAAGAACGCC GACATGGCGC TGTATCGCGC CAAGGCCGAT GGCCGTGGCA CCTATTGCTT CTTCCGCGAA GAGATGGCGA AAACCGTCGA GGCGCGCCGC ATCCTTGAAC TCGACCTGCG CAAGGCGCTC GCCAACGAGG AATTCGAGCT CTATTTCCAG CCCCTGGTCA ACCTGAAGAC CGGCCGGATT GCGACCTGTG AGGCGTTGTT GCGCTGGAAT CATCCGGTGC GCGGGACGGT CTCGCCGGTC GACATCATCC CGGTGGCCGA GGAAATGGGG CTGATCGTCG ATCTCGGCCG CTGGATCCTG CGCAAGGCCT GCATGGAATG CATGATGTGG CCGGAGCAAG TCAGTGTCGC GGTCAATTTC TCCTCGCAAC AGTTCCATCA GCGCGACGTG ATCAACGAGG TGCGCTATGC GCTCGAGGTC TCGGGCCTGC CGGCCAGCCG TCTCGAAATC GAGATTACCG AATCGTCGCT GCTGCGGAAC ACGCAGTTCA CCCACGACGC GCTGGAGCAA TTGCATGCCG AGGGTGTGCG GATCTCGCTC GACGATTTCG GCACGGGGTA TTCCAGCCTT AGCTATCTGC ACAGTTTCCC GTTGCAGAAG GTCAAGATCG ATCGGTCTTT CCTCGAGGGC ATCGACAGCG ATCGGCCGCT GACCCTGCTG CACGGCGTTG CACGGTTGAG CGCCGATCTC GGTATGGCCG TGGTCGTCGA GGGCATCGAG ACCAACGAAC AGCTCGAACG GATCAACTCC GAAGGCACCG TGACCGAAGG GCAGGGATAT CTGTTCAGTC GTCCGGTCCC CGCATCGCGA ATCCGCCAGC TACTCGCGGC TTCGCACGGC AATCGACAGA CGGACGGCGA GCCTCTGGTG CTGCCGTTTC GCTCGATCGC TTGA
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Protein sequence | MQLAAQDGTT EQKMSRSIYA ALVDSLFQNP APMFAGALSA AVAAVMTALK TGNHLLWICA LLLIATGALR SIDMHNYQRR KGTLTPDDAQ RWEMRYQIGA MLYAAALGFW CVIALIGTDD PVAHMICTCV TLSYMAAGAG RTYGRPWIFH LQILLACGSM SAALAWHGNI YYAGLALLNV VFFVGVKHIT TSLQQIFVRA LLGRERESAL AAQFDTALNN MPHGLCMFGP DGRLAVMNHR FTEMMKLRDS LVKNAPTATE IVAACVSIGA ISASSGRLIL SEVDNSLAGE IVTVGDESTP RSLSWTFQPM AGGGTVVLVE DITERRNAEA RIIHLARYDE LTGLPNRVNF HDEIERILTA SQGQNKAALS ALLFIDLDQF KQVNDTLGHP CGDRLLCAVA DRLRDMLRPE DFVARFGGDE FVVFQQNIRS NEDAAVLARR IVDRLSDRYL IDHHVVEIGA SIGIALTAPA TRADILLKNA DMALYRAKAD GRGTYCFFRE EMAKTVEARR ILELDLRKAL ANEEFELYFQ PLVNLKTGRI ATCEALLRWN HPVRGTVSPV DIIPVAEEMG LIVDLGRWIL RKACMECMMW PEQVSVAVNF SSQQFHQRDV INEVRYALEV SGLPASRLEI EITESSLLRN TQFTHDALEQ LHAEGVRISL DDFGTGYSSL SYLHSFPLQK VKIDRSFLEG IDSDRPLTLL HGVARLSADL GMAVVVEGIE TNEQLERINS EGTVTEGQGY LFSRPVPASR IRQLLAASHG NRQTDGEPLV LPFRSIA
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