Gene RPD_4112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_4112 
Symbol 
ID4024634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4576423 
End bp4577820 
Gene Length1398 bp 
Protein Length465 aa 
Translation table11 
GC content67% 
IMG OID637964320 
Productpeptidase U62, modulator of DNA gyrase 
Protein accessionYP_571232 
Protein GI91978573 
COG category[R] General function prediction only 
COG ID[COG0312] Predicted Zn-dependent proteases and their inactivated homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACTCTT CACCAAGCGT TCGATCGCCG TCTTCGAAAT CCGGGGATCA AGACCTGTTC 
GATCAGTCCG CGCTGAGTAC GCTGGCGCAA CGTCTGGTCG ATGCGGCTTT GCGCGCCGGC
GCCGATCAGG CGGATGCGGT CGCGGTGCGC GGCGTTTCGC ACGGCGTCGA AGTACGCGAT
GGACGGATGC AGGAATCCGA GCGCTCCGAA GGCGACGACG TCGGCCTGCG CGTGCTGGTC
GGCCGCCGCC AGGCGGTGGT CTCGACCAAC GACATCACGG GCGACGGCGT GTCCAAACTC
GCCGAGCGCG CGGTGGCGAT GGCGCGCGTC GCGCCGGACG ACAAATATGT CGGCCTCGCC
GATCCGGCCT TGCTGGCCCG CGACTTTCCC GAACTCGATA TGCTCGATCC GCAGACGCCG
TCGACTGCGG AACTGGAACG CCGGGCGCGG GAAGCCGAGC AGGCTGCGCT CGCGGTCAAG
GGCGTCAGCA AATCGGGCGG CGCATCGGCG TCGTCGGGCA TCGGCGGCAT GGTGCTGGTG
ACGTCGACCG GCTTCCACGG CGCCTATCTG CGCTCGAGCC AGGGCATCTC GATGACCGCG
ATCGCCGGCG ACGGCACCGG CATGGAGCGC GACTATGAAT ACACCACGGC GCCGCACGCC
GAGGACCTGA TGTCGCCGGA AACCGTCGGC CGCGTCGCCG GCGAACGCAC CGCGGCGCGG
GTGAATCCGC GCAAGGTCGA AACCTGCAAG GTGCCGGTGA TCTTCGATCC GCGCGTTGCC
GGCTCGCTGG TCGGGCATCT GGTCAGCGCC GCCAACGGCG CCTCGATCGC GCGAAAAACC
TCGTTTCTGA AAGATCGTCT CGGCGAGAAG CTGTTCCGTG ACGGCATCCG CATCATCGAC
GATCCGCTGC GCAAGCGCGG GCTGCGCTCG CAGGCGTTCG ATGCCGAGGG CGTCGCGGTG
AAGGAACTGG CGATCGTCGA TGACGGGGTG TTGACCACCT GGCTGCTCGA CTGTGCGACA
GCGCGTGAAC TCGGGCTGAC CACCACCGGC CATGCGCATC GCGGCGTGTC CTCGTCGCCG
TCGCCCGGCC CCTATAATCT GCATCTCGAA GGCGGCGCAA TCAGCCCCGC CGAACTGATG
AGCGATATCA AGCAGGGCTT CTACGTCACC GATCTGATCG GCTCCGGCGT CAATGGCGTC
ACCGGCGACT ACAGCCGCGG CGCTGCCGGG TTCTGGATCG AGAACGGCGA ATGCACCTAT
GCGGTCAGCG AAGTCACCAT CGCCGGCCAT CTGATCGCGA TGTACAAGAC GCTGACGCCG
GCCAACGATC TGACCTTCCG CTACGGCGTC AATGCTCCGA CGCTGCGGAT CGAGGGGCTG
ACGATTGCCG GACGCTAG
 
Protein sequence
MNSSPSVRSP SSKSGDQDLF DQSALSTLAQ RLVDAALRAG ADQADAVAVR GVSHGVEVRD 
GRMQESERSE GDDVGLRVLV GRRQAVVSTN DITGDGVSKL AERAVAMARV APDDKYVGLA
DPALLARDFP ELDMLDPQTP STAELERRAR EAEQAALAVK GVSKSGGASA SSGIGGMVLV
TSTGFHGAYL RSSQGISMTA IAGDGTGMER DYEYTTAPHA EDLMSPETVG RVAGERTAAR
VNPRKVETCK VPVIFDPRVA GSLVGHLVSA ANGASIARKT SFLKDRLGEK LFRDGIRIID
DPLRKRGLRS QAFDAEGVAV KELAIVDDGV LTTWLLDCAT ARELGLTTTG HAHRGVSSSP
SPGPYNLHLE GGAISPAELM SDIKQGFYVT DLIGSGVNGV TGDYSRGAAG FWIENGECTY
AVSEVTIAGH LIAMYKTLTP ANDLTFRYGV NAPTLRIEGL TIAGR