| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4069 |
|---|
| Symbol | glpD |
|---|
| ID | 4024586 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4521458 |
|---|
| End bp | 4522999 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637964272 |
|---|
| Product | glycerol-3-phosphate dehydrogenase |
|---|
| Protein accession | YP_571189 |
|---|
| Protein GI | 91978530 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0578] Glycerol-3-phosphate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.961718 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.638845 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGAAGA TTTTCGATCT CGCGATCATT GGCGGCGGGA TCAACGGCTG TGGCATCGCG
CGCGACGCGG CCGGCCGGGG CAATTCCGTT TTCCTCTGCG AGATGAACGA TCTGGCCAGC
GGCACCTCGT CGTGGTCGAC CAAGCTGATT CACGGCGGCT TGCGCTACCT CGAATATTTC
GAATTCCGAC TGGTCCGCGA GGCGCTGATC GAGCGCGAGC GGCTGTGGCA GATCGCGCCG
CACATCATCG GTCCGCTACG CTTCGTGTTG CCGCATCATT CCGGCTTGCG ACCGGCATGG
AGACTGCGGC TCGGGCTGTT TCTGTACGAT TACATCGGCG GCCGCAGATT GCTGCCGCCG
ACCCGCTCGG TCGAACTCGC CCATGACGAG GTCGGCAAGC CGCTGATCCC CGGGCGCTTT
ACCCGCGGCT TCGAATATTC CGATTGCTTT GTCGACGACG CGCGCCTGGT CGTGCTCACC
GCCCGCGACG CCGCCGAGCG CGGCGCCGAC ATCCGCACCC GCACCCGCGC GACCCAGGTC
CGGCAAAGCG ACGGCATCTG GGAGATTTCG CTCGAGGACA TGCAAAGCGG CGTCCGCAGC
ACGATCCAGG CGCGGACGCT CGTCAATGCC GCCGGTCCCT GGGTCGAGGC CGTGCTGGCC
TCCGGCGCCG GCGTCAATGC CACCTCGAAG GTGCGGCTGG TGCAGGGTTC GCACATCGTT
GTGCCGAAAC TCTACGCGCA CGATCGCGCC TACATCTTCC AGAACGCCGA TGGCCGCATC
GTGTTCGCGA TTCCGTATCA AGGTGATTTC ACCCTGATCG GCACCACTGA CCGCGACTAT
GACGGCGATC CCTCGCAAGT GAAGGCGACC CCGGAAGAGA TCAGCTATCT TTGCGACGCC
GTCAGCGCGT ATTTCGCCAA GCCGGTGACG CCGGCGGATG TGGTCTGGAC GTTCTCGGGC
GTTCGCCCGC TGTACGACGA CGGCGCCAGC GAAGCCAAAG CCGCGACCCG CGACTACGTG
TTCGAGCTCG ACACGCCGGG CGGCGCGCCG CTGCTGTCGA TCTACGGCGG CAAGATCACG
ACCTATCGCC GGCTGTCCGA AGAAGCGCTC GAGAAGCTCG CGCCCTATCT GAAAGGCGCC
AAGGCGAAAG AGGGCTGGAC CGCGCACAAA CCTTTGCCGG GCGGCGACTT TCCGACCGAT
GGCCTGCCGG CGCTGATCGC CGACCTCGGT CGCAACTATC CCTTCCTTTC CGCACCCCAT
GCGAGCCGAC TCGCGCACGC CTACGGCACG CGCGCGCGCG ATCTGCTCGG TGCGGCGAAG
TCGATGGCCG ACCTCGGCTG CGACTTCGGA GCCACATTGA CGGAGGCCGA AGTCCGCTAT
CTGATGAATC GCGAATGGGC TCGCAGCGCG GACGATATCG TCTGGCGGCG ATCCAAGCTT
GGTCTGCGGC TGCCGCCCTC CGCGCTCGCC GCGATCGATC AATGGATCAC CGCGCACCGC
GCGTCTGAAA AGCCCCAGCA GCAGGCGGGA GGTCGGGCAT GA
|
|---|
| Protein sequence | MAKIFDLAII GGGINGCGIA RDAAGRGNSV FLCEMNDLAS GTSSWSTKLI HGGLRYLEYF
EFRLVREALI ERERLWQIAP HIIGPLRFVL PHHSGLRPAW RLRLGLFLYD YIGGRRLLPP
TRSVELAHDE VGKPLIPGRF TRGFEYSDCF VDDARLVVLT ARDAAERGAD IRTRTRATQV
RQSDGIWEIS LEDMQSGVRS TIQARTLVNA AGPWVEAVLA SGAGVNATSK VRLVQGSHIV
VPKLYAHDRA YIFQNADGRI VFAIPYQGDF TLIGTTDRDY DGDPSQVKAT PEEISYLCDA
VSAYFAKPVT PADVVWTFSG VRPLYDDGAS EAKAATRDYV FELDTPGGAP LLSIYGGKIT
TYRRLSEEAL EKLAPYLKGA KAKEGWTAHK PLPGGDFPTD GLPALIADLG RNYPFLSAPH
ASRLAHAYGT RARDLLGAAK SMADLGCDFG ATLTEAEVRY LMNREWARSA DDIVWRRSKL
GLRLPPSALA AIDQWITAHR ASEKPQQQAG GRA
|
|---|
| |