Gene RPD_4026 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_4026 
Symbol 
ID4024543 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4474571 
End bp4476244 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content68% 
IMG OID637964229 
ProductABC transporter related 
Protein accessionYP_571146 
Protein GI91978487 
COG category[R] General function prediction only 
COG ID[COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase 
TIGRFAM ID[TIGR02323] phosphonate C-P lyase system protein PhnK 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACA ACGTCCTCGA GATCGACAAT CTGATCGTCC GGCTCGGCAG GTCCGGCGGT 
GGCGACAAGG TGATCGACGG CATCTCGCTG TCGGTGCGCC CCGGCGAAAC CATGTGCCTG
GTCGGCGAGA GCGGCTCCGG CAAATCGGTG ACCTCGCTCG CCACCATGGG GTTGCTGCCG
AAAGGCGCGT TGCACGCGAC CGGCGGCCAG ATCCGGCTCG CCGGCGAGAA TGTGCTCGCC
GCCAGCGAAC GGCGGCTGCG GCAACTCCGC GCCAGCCAGA TGGCGATGAT CTTCCAGGAG
CCGATGACGG CGCTCAACCC GGTGGTGCCG GTCGGCAAAC AGATCGACGA AGTGCTGCGC
TTTCACACCG ATCTCGGCGC GCGCGAGCGC CGCCGGCGCA TCCTCGACAT GATGCAGCAG
GTCCGACTGC CGGAAATCGA GCGCATCTTC GCGTCCTATC CGCACCGCCT CTCCGGCGGA
CAACGCCAGC GCATCATGAT CGCGATGGCG CTGGTGCTGG AGCCGAAGCT GCTGATCGCC
GACGAGCCCA CCACCGCGCT CGACGTGACC ACCCAGAAGC AGATCCTGAC GCTGATCCGC
GATTTGCAAC AGGCGCACGG CACGGCGGTG CTGTTCATCA CCCACGACAT GGGCGTGGTC
GCCGAGATCG CCGACCGGGT CGCGGTGATG CGCACGGGCC GCCTGGTCGA GACCGGGCCG
CTCGACGATG TGCTGCGCAA GCCCGCGATG GACTACACCC GCAAACTCCT GTCCGCGGTG
CCGAGCCTGG TGCCGCGGCC GCCGCGCGAA AACAAGGCGC TGCCGGTGGT GCTGGAGGCC
AACGAACTCG GAAAGGTGTA CCGCGAGCGC TCCTTGTTCG GCCGCAATCG CGAGGTGGTC
GCCGCGCAGG ACGTGACGCT GACGCTGCAC AAGGGCCGCA CGCTCGGGAT CGTCGGCGAA
AGCGGCTCCG GCAAATCGAC CGTGGCGCGC TGCATCGTGC GGCTGATCGA TCCGACCTCG
GGCGGCATCC GCCTCGCCGG CCGGGAAATC TCCGACCTGT CGCGGCGGCG GCTGCGGCCG
CACCGCAAGC GCATCCAGAT CATTTTCCAG GACCCGTATC GATCGCTCAA CCCGCGCGTC
AGCATCGGCG AGAGCATCGC CGAGGGCCCG ATCAATTACG GCATGCCGCG GGAGCAGGCG
CTGGAGAAAG CGCGGCAACT GCTCGAACTG GTGCATCTGC CGGCGGATGC GATCTCGCGG
TACCCACATC AGTTCTCCGG CGGCCAGCGC CAGCGCATCG CGATTGCCCG CGCGCTGGCG
CTCGATCCCG ACGTGCTGGT CGCCGACGAG GCGGTGTCGG CGCTCGACGT CTCGGTGCAG
GCGCAGGTGC TGGAGCTGCT CGACGAAATC CAGACGAGAC TCGGCATCGC GCTGCTGTTC
ATCACCCACG ATCTGCGCGT CGCCGCGCAG ATCTGCGACG AGGTCGTCGT GATGGAAAAA
GGCCGCGTCG TCGAGCAGGG TCCGGCAGGC GACGTGCTCA CTCATCCGAA GCAGGCCTAT
ACGCGGCAGT TGCTCGAAGC CGCGCCCGGG CGAGACTGGG ACTTCGCGAA TTTCCGGCCG
GTCGGCGAAG CGCCGCCGCT TCCGACGAAT TGCCCCGCCG CCCCCGGCCT GTAA
 
Protein sequence
MTDNVLEIDN LIVRLGRSGG GDKVIDGISL SVRPGETMCL VGESGSGKSV TSLATMGLLP 
KGALHATGGQ IRLAGENVLA ASERRLRQLR ASQMAMIFQE PMTALNPVVP VGKQIDEVLR
FHTDLGARER RRRILDMMQQ VRLPEIERIF ASYPHRLSGG QRQRIMIAMA LVLEPKLLIA
DEPTTALDVT TQKQILTLIR DLQQAHGTAV LFITHDMGVV AEIADRVAVM RTGRLVETGP
LDDVLRKPAM DYTRKLLSAV PSLVPRPPRE NKALPVVLEA NELGKVYRER SLFGRNREVV
AAQDVTLTLH KGRTLGIVGE SGSGKSTVAR CIVRLIDPTS GGIRLAGREI SDLSRRRLRP
HRKRIQIIFQ DPYRSLNPRV SIGESIAEGP INYGMPREQA LEKARQLLEL VHLPADAISR
YPHQFSGGQR QRIAIARALA LDPDVLVADE AVSALDVSVQ AQVLELLDEI QTRLGIALLF
ITHDLRVAAQ ICDEVVVMEK GRVVEQGPAG DVLTHPKQAY TRQLLEAAPG RDWDFANFRP
VGEAPPLPTN CPAAPGL