| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4008 |
|---|
| Symbol | |
|---|
| ID | 4024525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4453844 |
|---|
| End bp | 4455178 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637964211 |
|---|
| Product | phenylacetate--CoA ligase |
|---|
| Protein accession | YP_571128 |
|---|
| Protein GI | 91978469 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1541] Coenzyme F390 synthetase |
|---|
| TIGRFAM ID | [TIGR02155] phenylacetate-CoA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGCGC AGACCGCTCT CCGCGAAACG CCGATTTATA TGCATGACCG TGCCATCGAG
ACGATGCCGC GGCCGCAGCT CGCGGCGTTG CAGCTCGAGC GGCTGCGCAG AATCGTCGAG
CGCGCCTATC GCGACGTCCC GCATTATCGC CGGACGTTCG ACGCCGCCGG CGTCAAGCCG
TCCGAGCTGA CGTCGCTCGC CGATCTGGCG AAGTTTCCGT TCACCAAGAA GACAGATCTG
CGCGACAATT ATCCGTTCGA CATGTTCGCG GTGCCGCGCA ATCAGTTGCC GCGAATTCAC
GCATCATCCG GCACCACCGG AAAGCCGACC GTGGTCGGCT ACACCCGGAA CGATCTCGAT
AATTGGGCCG ACCTGATGGC GCGGTCGCTG GTCAGCGCCG GCGCCTCGCC GGACGACATC
GTTCACAACG CCTATGGCTA CGGCCTGTTC ACCGGCGGTC TCGGCGCGCA TTACGGCGCC
GAGCGGCTCG GCTGCACAGT GGTGCCGATC TCCGGCGGCG GCACCGAGCG TCAGGTCACG
CTGATGATGG ACTTCGGCGC CGACGTGCTG TGCAGCACGC CGTCCTACGC ACTCAACATC
GCCGAAGTCG CCGAGCAGAT GGGCGTCGAT CTGCGCAAGG CGCCGCTGCG CGTCGGGCTG
TTCGGCGCCG AGCCGTGGAG CGACGCGATG CGGCGCGACC TCGAGGCGCG GCTCGGCATC
AAGGCGATCG ACATCTACGG CCTGTCGGAG ATCATGGGCC CTGGCGTCGC CTGCGAATGC
CACGTCGCGC AGAATGGCCT GCACGGCTGG GAGGATCACT TCCTGTTCGA GACCATCGAT
CCGGAAACGC TGCAGCCGTT GCCGCTCGGC TCGACCGGCG AACTGGTGAT CACCACGCTC
ACCAAGGAAG CGCTGCCGAT GATCCGGTAT CGCACCCGCG ACATCACCAG CCTCTCGACC
GAGCCCTGCG CCTGCGGTCG CACCCATCTG CGGATCATGC GCGTCACCGG CCGCGACGAC
GACATGCTGA TCATCCGCGG CGTCAACGTC TATCCGTCGC AGGTGGAGTC GGTGCTGGTC
GGCTTCCCCG GCATCGCGCC GCACTACCAG ATCGTGCTGA CCCGCGACAA AGCGCTCGAC
GCCATGACCG TCGAAGTCGA GATCGCCCCG GATGCGCCGC GCGACGACGC CTCGCTGGCG
TACAAGGCCG CCGAGGTCAC GCATCACATC AAGTCGCTGA TCGGCGTCAC CTGCAAGGTC
ACCGTCAAGG CGCCCGGCGA AGTGCCGCGC TCGCAGGGCA AGGCGGTGCG GGTGAAGGAT
CAGCGGAATA TTTGA
|
|---|
| Protein sequence | MGAQTALRET PIYMHDRAIE TMPRPQLAAL QLERLRRIVE RAYRDVPHYR RTFDAAGVKP
SELTSLADLA KFPFTKKTDL RDNYPFDMFA VPRNQLPRIH ASSGTTGKPT VVGYTRNDLD
NWADLMARSL VSAGASPDDI VHNAYGYGLF TGGLGAHYGA ERLGCTVVPI SGGGTERQVT
LMMDFGADVL CSTPSYALNI AEVAEQMGVD LRKAPLRVGL FGAEPWSDAM RRDLEARLGI
KAIDIYGLSE IMGPGVACEC HVAQNGLHGW EDHFLFETID PETLQPLPLG STGELVITTL
TKEALPMIRY RTRDITSLST EPCACGRTHL RIMRVTGRDD DMLIIRGVNV YPSQVESVLV
GFPGIAPHYQ IVLTRDKALD AMTVEVEIAP DAPRDDASLA YKAAEVTHHI KSLIGVTCKV
TVKAPGEVPR SQGKAVRVKD QRNI
|
|---|
| |