| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3950 |
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| Symbol | |
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| ID | 4024466 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4393639 |
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| End bp | 4396758 |
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| Gene Length | 3120 bp |
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| Protein Length | 1039 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637964152 |
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| Product | conjugal transfer relaxase TraA |
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| Protein accession | YP_571070 |
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| Protein GI | 91978411 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.630291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGACGGC GTAGTCCCTC CCGAGATTTT TTCGAGGGAG GGCGCGCTTA TACGTCGTTC
CGACGTACGC TCCGCCGTGG CAATGATCTG GTCGCGATGG CGATCTATCA TCTTCACGTC
AAGGTCATTG GCCGCAAGGC CGGCTCCAGC GCGGTGGCGT CGGCCGCCTA CCGCTCGGGC
TCGCGGTTGC GTGACGAGCG TCTGGACCGC AGCCATGATT TTTCCGCCAA GCGCGGCGTC
GTTCATTCCG AGGTCATGCT GCCGGAGAAT GCGCCGGAGT CGTGGAGCGA CCGTGAACGG
CTCTGGAACG ATGTCGAAGC CGTCGAGATC CGCAAGGATG CGCAGCTTGC CCGCGAGGTC
GAGTTCGCCA TTCCGCGCGA GATGACACAG GTGCAGGGCA TCGAACTGGC CCGCGACTTC
GCGCAGTCGG AGTTCGTGGA CCGGGGCATG ATCGCCGATC TCAATGTGCA TTGGGATATG
GCCGAGGATG GAAGCCCCAA ACCGCATGCG CATATCATGC TGACCATGCG CGCCGTGGAC
GAGAATGGTT TCGGCCCGAA GGTGAGGGAG TGGAACCGCA CCGAGATAGT CGAGCGCTGG
CGGGAGCGCT GGGCCGAGAT CGCCAATCAG CGGCTGGCCG AACTCGACAT CGACGCTCGG
ATCGACCATC GCAGCTTCGA GGCGCAGGGC ATCGGGCTGG AGCCGCAAAG TCAGATCGGC
GCGCCCGCGC AGCGGATCGA AAGCCAAAGG ATCGAGGGGC AAGGGATCGA GGCCGCCGCC
AATGTGGCCG ACCGCGCGGA GATGCACCGC GAGATCGCGC GCGGCAACGG TGAGCGGATT
ATTGCCGATC CTTCCATCGC ATTGGACGCG ATCACGCATC AGCAATCGAC CTTCACGCAG
CGCGACATGG CAAAGTTTGC GCATCGCCAC AGCGACGGGA TCGACCAGTT CAACGCCGTG
ATCGGCGCGA TGCGCAGCGC GCCCGATCTG GTCGAACTCG GACAGGATGG TCGCGGCGAG
GACCGCTTCA CCACCCGCGA CATGATCGAG GCCGAGCAGC GCCTGCACCA CGCCGCCAAA
CTCATGGCCG AGCGGGAACG CCATGAGGTG AACGACGCTG ACAGGCAAGC GGCTCTGACG
CGTGCGGAAG CGCGCGGCCT TGTGCTGTCC GGCGAGCAGG CCGACGCGCT GGCGCATGTC
ACGGACGGGC GCGATCTCGG GATCGTGGTC GGCTATGCCG GAGCGGGAAA GAGCGCGATG
TTGGGCGTGG CGCGGGAGGC ATGGGAAGCG GCGGGTTACG AGGTTCGGGG CGTGGCGTTG
TCCGGCATCG CCGCCGAGAA TCTGGAAAGC GGATCGGGCA TTGCGTCACG CACCATTGCC
AGCCTGGAAC ATGGCTGGGG CCAGGGCCGC GACCTGCTCA GCGCGCGCGA TGTGTTGGTG
ATCGACGAGG CCGGCATGGT CGGCACGCGG CAATTGGAGC GCGTGCTGTC CCATGCCGCC
GAGGCTGGCG CCAAGGTCGT GCTGGTCGGC GATCCGCAAC AGCTCCAAGC AATAGAAGCC
GGTGCGGCGT TCCGCTCCAT TCACGAACGC CACGGCGGCG TCGCGATCGG CGAGGTACGC
CGCCAACGCG AGGAATGGCA GCGCGACGCC ACGCGCGATC TGGCGACTGG CAAGACCGGC
GCAGCGATCC ATGCCTATGA CGAAAACGGC ATGGTGCATG CTGCGGCGTC CCGCGAGCGG
GCACGGGGCG AACTGATCGA CCGCTGGGAC CGCGACCGGC AAGCATCGCC GGACCGCAGC
CGCATCATCC TCACCCATAC CAACGACGAG GTTCGCGCGC TCAACGAAGG GGCGCGGGAA
CGGATGCGGG CCGCGGGTGA TCTCGGTGAG GATGTGCATG TCACGGTCGA ACGCGGCGCG
CGCAGCTTCG CCACTGGGGA TCGCGTCATG TTCCTGCAAA ACGAACGCAG TCTTGGCGTG
AAGAACGGCA CGCTCGGCGC CATTGAGCAG GTCAGTCAGC AATCCATATC CGTGCGCATT
GATGACGGGC GCAGCGTCTC GTTCGACCTG AAGGATTACA ACCGCATCGA CCACGGCTAT
GCTGCGACCA TCCACAAGGC GCAGGGCATG ACGGTGGACC GCACCCATGT GCTGGCAACG
CCGGGCATGG ATGCCCATAG CAGCTATGTC GCGCTGTCGC GACATCGCGA CGGCATGGAC
CTGCATTATG GGCGTGACGA CTTCGCCAGC CAGGATCGGC TGGTCCGCAC CCTGTCGCGC
GACCGCGCTA AGGACATGGC GTCGGATTAC GAGCGCGCCG ATCCGCTGCA GGGCTACGCA
GAGCGGCGCG GCATCACTTT CCGCGAGCGT GTCGCCGAAA TCGTCCAGAA ACTCGTGCCG
GAGAAGCTAC GCGGTATGTT TGACGGCCTG CGCTTTCCTG GAGATGTGTC CGGCCACGAT
GGTGGACGGA GGCCAGAGCG GGAAACGCCG GAAAGGAGAA GCGCCGTGGC GGCGGTCCGG
CGAACGACGG ATACGCCGGA AAGGACCGTG GCGGCCGACA GGGACGCGGC GCTGCGCCAA
ACTCGCACCA AGGCGCTCAT TCGCCACGCC CGCGCCGTGA ATGCGATCTT CGAGATGCAG
CAGCAGGGCG GCAAGGCTAG CCCGGAGCAG GTAAAGGAAT TGCAGGAGGC CCGCAAGGAA
TTCGAGGCGG TGCGGCCCTA TGGATCGCAC GACGCCGAAG CCGCCTACAA GACGAACCCG
GAACTCGCAG AGCAAGCCGC TTCGGGCAAT CCCGCCCGCG CGATCCGCGC TCTCCAGTTC
GAAACCGAGC TGCGGACCGA CCCCGCCCGG CGCGCCGACC GTTTCGTGGA ACGTTGGCAT
AAGCTTGATC AGACCAGCCA GCACCAGTAT CAGGCGGGCG ACATGTCGGG CTACAAATCC
ACGCGGGCGG CGATGGGCGA CCTGGCCAAG AGCTTAGAGC GCGATCCGCA GCTTGAATCC
ATTCTCGCGG ACCGCAAGCA ACAACTCGGC ATCGCGTTCG AAACAGGCCG CCGGCTCGGC
CAGGAATTGG CATTCACCCA CGGCATCGAT CTCGGCAGAG GCCGGGGTAT CGGGCTCTGA
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| Protein sequence | MRRRSPSRDF FEGGRAYTSF RRTLRRGNDL VAMAIYHLHV KVIGRKAGSS AVASAAYRSG
SRLRDERLDR SHDFSAKRGV VHSEVMLPEN APESWSDRER LWNDVEAVEI RKDAQLAREV
EFAIPREMTQ VQGIELARDF AQSEFVDRGM IADLNVHWDM AEDGSPKPHA HIMLTMRAVD
ENGFGPKVRE WNRTEIVERW RERWAEIANQ RLAELDIDAR IDHRSFEAQG IGLEPQSQIG
APAQRIESQR IEGQGIEAAA NVADRAEMHR EIARGNGERI IADPSIALDA ITHQQSTFTQ
RDMAKFAHRH SDGIDQFNAV IGAMRSAPDL VELGQDGRGE DRFTTRDMIE AEQRLHHAAK
LMAERERHEV NDADRQAALT RAEARGLVLS GEQADALAHV TDGRDLGIVV GYAGAGKSAM
LGVAREAWEA AGYEVRGVAL SGIAAENLES GSGIASRTIA SLEHGWGQGR DLLSARDVLV
IDEAGMVGTR QLERVLSHAA EAGAKVVLVG DPQQLQAIEA GAAFRSIHER HGGVAIGEVR
RQREEWQRDA TRDLATGKTG AAIHAYDENG MVHAAASRER ARGELIDRWD RDRQASPDRS
RIILTHTNDE VRALNEGARE RMRAAGDLGE DVHVTVERGA RSFATGDRVM FLQNERSLGV
KNGTLGAIEQ VSQQSISVRI DDGRSVSFDL KDYNRIDHGY AATIHKAQGM TVDRTHVLAT
PGMDAHSSYV ALSRHRDGMD LHYGRDDFAS QDRLVRTLSR DRAKDMASDY ERADPLQGYA
ERRGITFRER VAEIVQKLVP EKLRGMFDGL RFPGDVSGHD GGRRPERETP ERRSAVAAVR
RTTDTPERTV AADRDAALRQ TRTKALIRHA RAVNAIFEMQ QQGGKASPEQ VKELQEARKE
FEAVRPYGSH DAEAAYKTNP ELAEQAASGN PARAIRALQF ETELRTDPAR RADRFVERWH
KLDQTSQHQY QAGDMSGYKS TRAAMGDLAK SLERDPQLES ILADRKQQLG IAFETGRRLG
QELAFTHGID LGRGRGIGL
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