Gene RPD_3901 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3901 
Symbol 
ID4024417 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4338509 
End bp4339486 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content67% 
IMG OID637964105 
Producthypothetical protein 
Protein accessionYP_571023 
Protein GI91978364 
COG category[S] Function unknown 
COG ID[COG3181] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACCTA TCCGCGCCGC GCTGGCGGCT GCTGTGTTGT CTGCGACGAT CGCGGCCGCG 
CCGCAGGCGA CCGCGCAGAA CGCAGCCTAC CCCAACCGCA ACATCACGCT GGTGCTGCCG
TTCGCGGCCG GCAGCGGCAC CGACACGACG ACGCGCATCA TCTCGCAGAA ACTCGGCCAG
GCGCTCGGCG TCAGCATGGT GATCGAGAAC AAGGCCGGCG CCAACGGCAT GATCGCCGCG
GCCTATGTCG CCCGCGCCCA GCCGGACGGC TACACGCTGT TCGTCACCAC CAACACCACG
CATTCCGCCA ACCCGTATCT GCTGAAGAAC CTGACCTACG ATCCGGTAAA GGATTTCGCG
CCGGTGGCGC GCACCGGTGA CCTGCCGTTC ATGCTGGTGG TGCATCCGGA CGTGCCGGCC
AAGACCGTCG CCGAACTGGT CGCCTACGCC AAGGCCAATC CGGGCAAGCT GACCTACGCC
TCCGGCTCGT CGTCGGCGAT CGTTTCGGGC GCGACCTTCG CCCGCAAAGC CGGGATCGAC
CTTCTGCACG TGCCGTACAA AAGCTCGCCG CCGGCGATGA ACGACGTCAT CGGCGGGCGC
ATCACCATGA TGTTCACCGA CGTGCTCACC GGCCTGCCGC ACGTCAACGG CGGCGCGCTG
CGCGCGCTCG CGGTGACGAC CAAGGACCGC TCGCCGCTGG TGCCCGATCT GCCGTCGATG
CAGGAAGCCG GCGTCCCCGA TTTCGATATC ACCTCGTGGC AGGGCTATTT CGCGCCGGCC
GGCACGCCGA AGGAGGTGGT GGCCAGGCTC AACACCGAGA TCCGCAAGAT CGTCGAGGAC
CCCGAGACCA AAGCCAAGCT TGCCACCCTC GGCATGGAGG CCTTCTCCGG CACGCCGGAA
CAGCTCGGCA AATTCGTCGA CGATCAGCTC GTGCTGTGGG AGCGGCTGGT GCGCGAGGCG
GGAATCGAGA AGCAGTAA
 
Protein sequence
MRPIRAALAA AVLSATIAAA PQATAQNAAY PNRNITLVLP FAAGSGTDTT TRIISQKLGQ 
ALGVSMVIEN KAGANGMIAA AYVARAQPDG YTLFVTTNTT HSANPYLLKN LTYDPVKDFA
PVARTGDLPF MLVVHPDVPA KTVAELVAYA KANPGKLTYA SGSSSAIVSG ATFARKAGID
LLHVPYKSSP PAMNDVIGGR ITMMFTDVLT GLPHVNGGAL RALAVTTKDR SPLVPDLPSM
QEAGVPDFDI TSWQGYFAPA GTPKEVVARL NTEIRKIVED PETKAKLATL GMEAFSGTPE
QLGKFVDDQL VLWERLVREA GIEKQ