| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3846 |
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| Symbol | fliF |
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| ID | 4024362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4282230 |
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| End bp | 4283828 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637964050 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_570968 |
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| Protein GI | 91978309 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.184331 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAGAGTT TGCTGGGTTT TCTGAAAGGC TTGGGCGCTG CCCGGGTGAT GGCCATGATC
GCCGTCACCG TGGCGCTGCT CGGGTTTTTC GCTTTCGTCA TCATGCGCGT CTCGCAGCCG
CAGATGACGA CCCTCTATAC CGACCTCAGT GTCGAGGATT CCTCCAGCAT TATCAAAGAG
CTGGAGCGCC AGGCGATCCC GTTCGAAATG CGCAACGAAG GCACCACTTT GATGGTGCCG
AAGGATAAGG TCACGCGGCT GCGGATGAAG CTCGCCGAGG GCGGCCTGCC GAAGGGCGGC
GGCGTCGGCT ACGAGATCTT CGACAAGTCG GACGCGCTTG GCACCACCAG CTTCGTCCAG
AACATCAATC ATCTCCGCGC ATTGGAGGGC GAGCTCGCCC GCACCATCCG CGCCATCGAC
CGGATCCAGC AGGCGCGGGT GCATCTGGTG CTGCCGGAGC GGCCGCTGTT CTCGCGGGAA
ACGCCGGAGC CGTCTGCGTC GATCGTGCTG CGGGTCCGCG GCGCGCTGGA GCCGCAGCAG
GTCCGCGCCA TCCGCCATCT GGTTGCCTCG GCGGTCAACG GTCTGAAGCC GCAGCGGGTA
TCGATCGTCG ACGAGGGCGG CCAGCTGCTC GCCGACGGGT CGGCCAGCGC CAATGCCGCC
GACGGCGCCG CCGGCGACGA ACGCCGCACC AGCTTCGAGA AGCGGATGCG CAACGAGATC
GAGGGCATCG TGTCGTCGGT CGTCGGCTCC GGCCGCGCCC GGGTCCAGGT CACCGCCGAT
TTCGATTACA ACAAGATCAC CCAGACCTCG GACAAGTTCG ACCCCGAAGG CCGCGTGCTG
CGCTCCAGCC AGACCCGCGA GGAACAGTCG CAGACGTCGG CGGCCGACGG TCAAGTCACG
GTCAACAACG AATTGCCCGG CAATCAGGGG CAGGCCGGCA CCGGACCGCG CGACCAGAGC
AAGAAGTCCG AAGAGACCAA CAATTACGAG ATCTCGCGCA TCACCAAGAC CGAGGTGACC
GAAGCCGGCC GGGTGAACCG CCTGTCGGTC GCGGTGCTGG TCGACGGCAT CTACACCAAG
AACGAAAAGG GCGAACTGGT CTACGCCGAG CGGCCGAAGG AGCAGCTCGA CCGCATCGCG
GCGCTGGTGC GATCGGCGAT CGGCTTCGAC CAGAAGCGCG GCGACCAGAT CGAGGTCGTC
AATCTGAAAT TCGCCGAGGC GCCGCAGGTC GAGAAACTGC CGGAGCAGGC CGGCCTGCTC
GGCATGTTTC AGTTCACCAA GGATGACATC ATGAACATGA TTCAGCTCGG CGTGATGTTG
GTGCTCGGTC TGGTGGTGCT GTTCATGGTG ATCCGCCCGC TGGTCAAGCG CGTGCTGGCC
TCCGATCCGG GGCCGGAAGG ACCCGGCTTG CCGGCCCTGA CTGACGGCAG CGTGCCGCAG
ATCGGCGCTG ATGGGCAGCC ACAGCCCAGC ATGATCGACA TCGCCCAGGT GCAGGGCCAG
GTCCACGCCC AATCGGTCCA TCGCGTCGGC GAGCTCGCCG ATCGCAATCC CAACGAGACC
GCAGCCATTG TCCGACAATG GCTGGCCGAG CCCGCTTAA
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| Protein sequence | MQSLLGFLKG LGAARVMAMI AVTVALLGFF AFVIMRVSQP QMTTLYTDLS VEDSSSIIKE
LERQAIPFEM RNEGTTLMVP KDKVTRLRMK LAEGGLPKGG GVGYEIFDKS DALGTTSFVQ
NINHLRALEG ELARTIRAID RIQQARVHLV LPERPLFSRE TPEPSASIVL RVRGALEPQQ
VRAIRHLVAS AVNGLKPQRV SIVDEGGQLL ADGSASANAA DGAAGDERRT SFEKRMRNEI
EGIVSSVVGS GRARVQVTAD FDYNKITQTS DKFDPEGRVL RSSQTREEQS QTSAADGQVT
VNNELPGNQG QAGTGPRDQS KKSEETNNYE ISRITKTEVT EAGRVNRLSV AVLVDGIYTK
NEKGELVYAE RPKEQLDRIA ALVRSAIGFD QKRGDQIEVV NLKFAEAPQV EKLPEQAGLL
GMFQFTKDDI MNMIQLGVML VLGLVVLFMV IRPLVKRVLA SDPGPEGPGL PALTDGSVPQ
IGADGQPQPS MIDIAQVQGQ VHAQSVHRVG ELADRNPNET AAIVRQWLAE PA
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