| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3815 |
|---|
| Symbol | |
|---|
| ID | 4024331 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 4255032 |
|---|
| End bp | 4255790 |
|---|
| Gene Length | 759 bp |
|---|
| Protein Length | 252 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637964019 |
|---|
| Product | regulatory protein, TetR |
|---|
| Protein accession | YP_570937 |
|---|
| Protein GI | 91978278 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00651597 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATA TATGGGCCAT TCGGCCGAGT CAATCGACAG CCTCCACGGA AACCATGACG
GACGAACGCA CCGCCAACGA TCAATCGCCC TGGATGCCGT TCGAGAATCG CCGTCGCGCC
CGCGACGAAA AGCGCGAGGC CGTACTGCGA ATGGCGGTGC AGGTGTTTCT CGAACAAGGC
TATCATCGCG CCACACTGAA TGAAGTGGCC GAACGGCTGA ACATCACCAA GCCTGCGCTG
TACAATTACT TCCGCAGCAA GGACGAGATC CTGTTCGAGT GCTGGGCGCT CGGCCAGGAA
CAGGTCGACG ATCTGATCGC CGTGATCAAC CGCAGCCGCC AGAGCGGCCT CGGCAAGTTG
CGCGCGCTGG TCCATGCCTA TGCCGAGACG ATGGCGACGG ATTTCGGCGC CAGTCTGGTG
AGGTTCGACC CCCGCGACCT GAAGCCGCAC AATGCTGAGA AAGTGCGTGC CGCCAAGCGC
GGCATCGACC TGACTTTCCG GCGCTACATT GCGGAAGGCA TCGCCGATGG CTCGATCAAG
CCGTGTGATC CGAAGCTCGC CGCTTTCGCG ATCGCAGGCT CTCTGAACTG GATCGGCCAT
TGGTATCAGC GCGGCGGCTC GCTGACGCCG GATGCGATCG CCGATGAATT CGCCATTCGC
CTGACCGATG GCCTCGCCAG GCGATCGGTC AAAAAAGCAA GCGCCGAAGC GGCGCCGGCT
CCACGCACGA GAAAACCAAC CAAGGGAGAG AATAGATGA
|
|---|
| Protein sequence | MSNIWAIRPS QSTASTETMT DERTANDQSP WMPFENRRRA RDEKREAVLR MAVQVFLEQG
YHRATLNEVA ERLNITKPAL YNYFRSKDEI LFECWALGQE QVDDLIAVIN RSRQSGLGKL
RALVHAYAET MATDFGASLV RFDPRDLKPH NAEKVRAAKR GIDLTFRRYI AEGIADGSIK
PCDPKLAAFA IAGSLNWIGH WYQRGGSLTP DAIADEFAIR LTDGLARRSV KKASAEAAPA
PRTRKPTKGE NR
|
|---|
| |