| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3811 |
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| Symbol | |
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| ID | 4024327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4252077 |
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| End bp | 4252904 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637964015 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_570933 |
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| Protein GI | 91978274 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.077529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAAAAC TGCAAGGAAA GGTGGCGCTG GTCACCGGAT CGGGCCGCGG CATCGGCCGC
GCGATCGCAC TGAAGCTCGC GTCGGAAGGC GCGCGGGTCG TGATCAACGA CCTCGACGAC
GAGCCGGGTG ATGCTGTGGC GGCCGAGATC AAGGCCCGCG GTGGCGAGGC GATCGCGATC
AACGGCAGCG TCTCCGAGGC AGGCTTCGCC GACCGTTTCG TCGGCGCGGC GGTCGAAGAA
TTCGGCGGTC TCGACATCAT CGTCAACAAC GCCGGCTACA CCTGGGACTC GACCATCCAG
AAGATGACCG ACGAGCAATT CCAGGCGATG CTCGACGTGC ATCTGGTGGC GCCGTTCCGC
ATCCTGCGCG CCGCCGCCGA GCCGATCCGG ATCTTCGCCA AGCAGGAGGC CGAGGCCGGG
CGCGAGGTGT TCCGCAAGGT GGTGAACATC TCGTCGATCG CCGGACTTTA CGGCAATGCC
GGCCAGGCGA GCTATTCTTC TGCCAAGGCG TCGCTGGTCG GCCTGACGCG GACGATGTGC
AAGGAGTGGG GCCGTTACAA GGTCAACGTC AATTGCGTGG CGTTCGGCCT GATCAACACA
AGGCTGACCC AGCCGATCGA AGCGCAGCAG AAGACCATCG ACGTCGCTGG TCGCGACATC
AAGGTCGGTG TCCAGCCGCA GATGCTGGAT GCGATGGCGC GGATGATCCC GCTCGGCCGC
GGCGGTACGG CCGAAGAGGC CGCGGACGCG GTCTATCTGT TCTGCAGCCC GGAATCCAAC
TACATCAGTG GTCAGGTCGT CGTCTGCGGC GGCGGGCTCA TCATTTAA
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| Protein sequence | MSKLQGKVAL VTGSGRGIGR AIALKLASEG ARVVINDLDD EPGDAVAAEI KARGGEAIAI
NGSVSEAGFA DRFVGAAVEE FGGLDIIVNN AGYTWDSTIQ KMTDEQFQAM LDVHLVAPFR
ILRAAAEPIR IFAKQEAEAG REVFRKVVNI SSIAGLYGNA GQASYSSAKA SLVGLTRTMC
KEWGRYKVNV NCVAFGLINT RLTQPIEAQQ KTIDVAGRDI KVGVQPQMLD AMARMIPLGR
GGTAEEAADA VYLFCSPESN YISGQVVVCG GGLII
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