| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3810 |
|---|
| Symbol | |
|---|
| ID | 4024326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4250921 |
|---|
| End bp | 4252066 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637964014 |
|---|
| Product | acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_570932 |
|---|
| Protein GI | 91978273 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.409064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTATC GATCGCCCTG GATGACCGAA GAGCTGGACA CGTTTCGTGA CCAGTTCCGC
AAGTTTCTCA CCAAGGATCT GGCTCCGCAC GCCGACAAAT GGCGGAATCA GAAGATGGTG
GACCGTTCCG CCTGGCTCAA GCTCGGCGAA ATGGGCGCGC TGCTGCCGAG CGTCCCGGAG
GCCTATGGCG GTCTCGGCGC CAGCTTCGCT TACGACGCCG CGATCTATGA GGACATGGAG
TCGATTGTCC CGGACGCGCT GTCGGGCGTC ACCGTGTCGA GCGGCATCGT CGCGCACTAC
ATCCTGAACT ACGGCTCGGA AGAGCAGAGG CTGCGTTGGC TTCCCGCAAT GGCGCGCGGC
GAGCTGATCG GCGCCATCGC GATGACCGAG CCCGGAACCG GCTCCGATCT GCAGAGCGTG
CGGACCACTG CGAAGCTCGA GGGCGACACC TACGTCATCA ACGGCCAGAA GACCTTTATC
ACCAATGGCC AGAACGCCGA TCTGATCATC GTCGTCGCTC GCACCGGCGG CCCGGGCGCC
AAGGGCCTTT CGCTGATCGC GCTGGAGACG GAGGACAATC CCGGTTTCAA GCGCGGCCGC
AACCTCGACA AGATCGGTCT GCACGCGTCC GACACCTCCG AACTTTTCTT CGAAAACGCG
ACGGCGCCGA AGGAGAACGT GCTCGGCGGC GAGGAGGGCA AGGGCTTCGT TCAATTGATG
CAGCAATTGC CGCAGGAGCG GCTGATCATC GCGGTCGGCG CCGTGGCGGC GATGGAGCGC
GCGGTCAAGC TGACCACGGA CTACACCCGC GAGCGCAAGG CGTTCGGCCA GCCGATCATC
GAATTCCAGA ACACCGCCTT CACGCTCGCC GAGCGCAAGA CCGAAGCGTT CATCGGGCGT
GTGTTCGTCG ACTTCTGCAT CGAGCGGCTG ATCGCAGGTG ACCTCGATGC GGTGACGGCG
TCGATGGCGA AGTGGTGGAC CACGCAGAAG CAGGTCGAGA CCGTCGACGA TTGCCTGCAG
CTGCATGGCG GTTACGGCTA CATGCAGGAG TACCCGATCG GGCGGATGTT CGTGGATTCG
CGAATCCAGA AGATCTACGG CGGCACCAAC GAGGTGATGA AGCTGCTGAT CGCGCGATCG
CTGTAA
|
|---|
| Protein sequence | MQYRSPWMTE ELDTFRDQFR KFLTKDLAPH ADKWRNQKMV DRSAWLKLGE MGALLPSVPE
AYGGLGASFA YDAAIYEDME SIVPDALSGV TVSSGIVAHY ILNYGSEEQR LRWLPAMARG
ELIGAIAMTE PGTGSDLQSV RTTAKLEGDT YVINGQKTFI TNGQNADLII VVARTGGPGA
KGLSLIALET EDNPGFKRGR NLDKIGLHAS DTSELFFENA TAPKENVLGG EEGKGFVQLM
QQLPQERLII AVGAVAAMER AVKLTTDYTR ERKAFGQPII EFQNTAFTLA ERKTEAFIGR
VFVDFCIERL IAGDLDAVTA SMAKWWTTQK QVETVDDCLQ LHGGYGYMQE YPIGRMFVDS
RIQKIYGGTN EVMKLLIARS L
|
|---|
| |