Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3780 |
Symbol | |
ID | 4024296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4217749 |
End bp | 4220913 |
Gene Length | 3165 bp |
Protein Length | 1054 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637963984 |
Product | hydrophobe/amphiphile efflux-1 HAE1 |
Protein accession | YP_570902 |
Protein GI | 91978243 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0221065 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTCAT TCTTTATCGA CAGGCCGGTC TTCGCCTGGG TCATCGCGCT GTTCATCTGT TTGATCGGCG CGATTTCGAT TCCGTTCCTG CCGGTCGCGC AGTATCCGAT CATCGCGCCG CCGTCGATTT CGGTGTCGAC GCAGTATCCC GGCGCATCGC CCGAGAACCT GTACAACAGC GTCACCCGGC TGATCGAAGA AGAGCTCAAC GGCGCCAATG GCATTCTGAA CTTCGAATCG ACCAGCGACT CGCTCGGTCA GGTCGAGATC ATCGCCAATT TCGTGCCCGG CACCGACACC GGCATGGCGT CGGTCGACGT GCAGAACCGA ATCAAGCGCG TCGAGGCGCG GTTGCCGCGG GCGGTGCTGC AGCAGGGCAT CCTGGTCGAG GAAGCCTCGA GCGCGGTGCT GCAGATCATC ACGCTGAGTT CGACCGACGG CTCGCTCGAC GAAGTAGGCC TCGGCGACTT CATGATCCGC AACGTGCTGG GCGAAGTTCG CCGCATCCCG GGCGTCGGCC GCGCCACGTT GTACTCGACG GAACGCGCGA TGCGGATCTG GATCGATCCG GACAAGCTGG TCGGCTACAA CCTGACCGCC GACGACGTCA CCAAGGCGAT CCAGGCGCAG AACGCCCAGG TCGCCTCGGG AAGCATCGGC GCCGAACCCA GCAGCAAGGG CCAGAAGATT TCCGCGCTCG TGCTGGTCAA GGGCCAGCTC ACATCGCCGG ATGAGTTCGG CGCGATCGTG CTGCGCGCCA ATCCCGATGG CTCGACTGTG CGGCTGCGCG ACGTCGGCCG GGTCGAGGTC GGCGGCTTCA GCTATCAGTT TAACACCCGC CTCAACGGCA AGGCGACGGC AGGCCTGTCG GTATTGTTAG CGCCGACTGG CAATGCGCTC GCCACCGCCA GCGCGGTCGA AGAAAAGATG AAGGAGCTGT CGCGCTTCTT CCCGGCGAAC ATCAGCTACC AGATTCCCTA CAACATCACC CCGGTGGTCG AAGCCTCGAT CACCAAAGTG CTGTACACGC TGATCGAAGC GGTGGTGCTG GTTTTCATCG TGATGTTCAT ATTCCTGCAG AACATCCGTT ACACAATCAT TCCGACCATT GTGGTGCCTG TGGCGCTGCT GGGCACCTGC CTGTCGCTGC TGCTGTTCGG CTATTCGATC AACATGCTGA CGATGTTCGG CATGGTGCTG GCGATCGGCA TTCTGGTCGA CGATGCGATC GTCGTGGTCG AAAACGTCGA ACGCATCATG GCCGAGGAGG GGCTGCCGCC GAAGGAAGCG ACCCGCAAGG CGATGACGCA GATCACCAGC GCGATCATCG GCATCACGCT GGTGCTGATC GCGGTGTTCG TGCCGATGGC GTTCTTTCCC GGCTCGGTCG GCATCATCTA TCGGCAGTTC TCGGTGACGA TGGTGTCGGC GATCGCGTTT TCGGCGTTGC TGGCGCTATC GCTGACGCCG GCGCTGTGCG CTACGCTGCT GAAGCCGGTG GTGAAAGGCC ATGCCCACGC TGAACGCGGC TTCTTCGGCC GGTTCAATCG CATTCTCGAC GGCACGCGCG AGCGTTATTC CAGTATCGTC CGGTGGAATC TCGGGCGAAC CGGCCGGCTG ATGGTCATCT ACGCGGTGCT CGTCGGCGTT CTTGGATGGG CGCTCGTCAA GATGCCCGGC GGCTTTTTGC CGGTGGACGA CCAGGGCTTC GTCACCGTCG ATCTGCAGAC GCCGTCGGAC TCGTCTTACA ACCGCACCTA CGATGTGGTG AAGCAGGTCG AGGAGTATCT GCTCAAGCGC GACGGCGTCG ACAACGTCAC CTTCCTCACC GGCTTCAGCT TTCTCGGCCA GGGCATGAAC GCGGCGCAAG CCTTCGTCAC CCTCAAGCAC TGGTCGGACC GCGGCGCAAA AGACAGCGCT TCTGCGATCG TCGACGACGC CAACAAATCG CTCAGCTCGA TTCGCGACGC CCGTATCGCC GCGCAACAGC CGCCGCCGGT CGACAACCTC GGCAACTCGT CGGGCTTCAG CTTCCGCCTG CAGGATCGTG GCCAGAAGGG CAACGCCGCG TTGGTACGGG CCAGCGAACA GCTCGTCGCC GCCGCCAACA AGAGCCCGAT TCTGCACAAG GTCTACGTCG AAGGCCTGCC CCCGGCGCCG GTCGTAAATC TGATGATCGA CCGTGAGAAG GCCGGCGCCT TCGGCGTCAC CTTCGAAGAC ATCAACAACA CCATCTCGAC CAATCTCGGC TCGGCCTACA TCAACGACTT CCCCAATCGC GGCCGTATGC AACGCGTCAT CGTGCAGGCC GATATCTCGG ACCGCATGAA GGCCGAGGAA ATCCTCGCTT ATTCGGTGAA GAACAGCCGC GGTCAGCTCG TGCCGCTGTC GTCCTTTGCG ACGATCGAGT GGTCGAAGGG GCCGACGCAG ATCGTCGGCT TCAATTACTA TCCAGCCGTT CGCATCAGCG GCGAGGCGCG GCCCGGCTAC ACCTCGGGCG ATGCGATCGG TGAGATGGAG CGGCTCGCCG GGCAGCTGCC GCGCGGCTTC GGTTACGATT GGACCGGCCA GTCGCTACAG GAGAAGCTGT CGGGTTCGCA GGCGCCGTTC ATCCTCCTGC TGTCGGCGCT GATGGTGTTC CTGGTGCTCG CCGCGCTGTA CGAAAGCTGG ACGATTCCGC TGACGGTGCT GCTTGCCGTG CCGCTCGGCA TCACCGGATC GGTTATCGCC GCGACGATAC GTTCTCTACC GAACGACGTG TATTTCACCG TCGGGCTGAT CACGATCATC GGATTGGCCG CCAAGGACGC CATTCTGATC GTCGAATTCG CCAAGGACCT GCGTAAGGAA GGCAAGACGC TGCGTGAGGC GACGATGGAG GCCTGTCATC TGCGATTTCG GCCGATCCTG ATGACCGGGC TCGCGTTCGT CAGCGGCGTT CTGCCGATGG CGATCGCCAC TGGCGCTGGC GGCAAGAGCC AGCAGGCGCT CGGTTCCGGC GTGATGGGCG GCATGATCGC CGTGGTGGTG CTGGCGCTGT TGATGGTTCC GGTATTCTTC GTCGTGGTGC AGCGGCTGTT CGCCGGCGAC CGGTCGGACG ATCCGGTCAA AGCCGGCGTG AAGCACGAGG TGCCAGCGGA GATTCAGCCA AGAGATGCCC GCTAA
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Protein sequence | MPSFFIDRPV FAWVIALFIC LIGAISIPFL PVAQYPIIAP PSISVSTQYP GASPENLYNS VTRLIEEELN GANGILNFES TSDSLGQVEI IANFVPGTDT GMASVDVQNR IKRVEARLPR AVLQQGILVE EASSAVLQII TLSSTDGSLD EVGLGDFMIR NVLGEVRRIP GVGRATLYST ERAMRIWIDP DKLVGYNLTA DDVTKAIQAQ NAQVASGSIG AEPSSKGQKI SALVLVKGQL TSPDEFGAIV LRANPDGSTV RLRDVGRVEV GGFSYQFNTR LNGKATAGLS VLLAPTGNAL ATASAVEEKM KELSRFFPAN ISYQIPYNIT PVVEASITKV LYTLIEAVVL VFIVMFIFLQ NIRYTIIPTI VVPVALLGTC LSLLLFGYSI NMLTMFGMVL AIGILVDDAI VVVENVERIM AEEGLPPKEA TRKAMTQITS AIIGITLVLI AVFVPMAFFP GSVGIIYRQF SVTMVSAIAF SALLALSLTP ALCATLLKPV VKGHAHAERG FFGRFNRILD GTRERYSSIV RWNLGRTGRL MVIYAVLVGV LGWALVKMPG GFLPVDDQGF VTVDLQTPSD SSYNRTYDVV KQVEEYLLKR DGVDNVTFLT GFSFLGQGMN AAQAFVTLKH WSDRGAKDSA SAIVDDANKS LSSIRDARIA AQQPPPVDNL GNSSGFSFRL QDRGQKGNAA LVRASEQLVA AANKSPILHK VYVEGLPPAP VVNLMIDREK AGAFGVTFED INNTISTNLG SAYINDFPNR GRMQRVIVQA DISDRMKAEE ILAYSVKNSR GQLVPLSSFA TIEWSKGPTQ IVGFNYYPAV RISGEARPGY TSGDAIGEME RLAGQLPRGF GYDWTGQSLQ EKLSGSQAPF ILLLSALMVF LVLAALYESW TIPLTVLLAV PLGITGSVIA ATIRSLPNDV YFTVGLITII GLAAKDAILI VEFAKDLRKE GKTLREATME ACHLRFRPIL MTGLAFVSGV LPMAIATGAG GKSQQALGSG VMGGMIAVVV LALLMVPVFF VVVQRLFAGD RSDDPVKAGV KHEVPAEIQP RDAR
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