| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3765 |
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| Symbol | |
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| ID | 4024281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4201498 |
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| End bp | 4202547 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963969 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_570887 |
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| Protein GI | 91978228 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.142197 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00585073 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGTAC ATTCCGATAT GCTGGCCTGC CGCGTGATGA TCAAGGAAGG TTCGCGCACG
TTTCACGCCG CGTCGAAGGT GCTGCCGCGC CGGATCAGCG ATCCGGCGAT TGCGCTGTAC
GCGTTTTGTC GCGTCGCCGA CGACGCCGTC GATCTCGGCC TCGATCGCAG CAATGCGGTC
GAAGTGCTGA AGGACCGACT CGACCGCGCC TGTCGCGGTC TGCCCCGGCC ATATCCGTCG
GATCGCGCCT TCGCCGACGT GATCGCGCGC TTCTCGATTC CGCCGGCGAT TCCCGAGGCG
CTGATCGAAG GTCTCGAATG GGACTCGCAG GGCCGCCGCT TCGAGACGTT GTCTGATCTC
TACGGCTATG CCGCGCGCGT CGCCGGCACC GTCGGCGTGA TGATGACGCT GGTGATGGGG
CAGCGCAGAC CGGACATTGT CGCGCGTGCC TGCGATCTCG GCTGCGCGAT GCAACTCACC
AACATCGCCC GCGACATCGG CGAGGACGCG CGCAACGGCC GCATTTACAT GCCGCTGTCG
TGGATGCGCG AAGCCGGGCT CGATCCGGAA AAGTGGCTCG CCGACCCGAA ATTCACGCCG
GAGATCGCCG GCATCGTCAA GCGGCTGATC GACACCGCGG ATGCGCTGTA CGATCGCGCC
ACGCTCGGCA TCGCGAACCT GCCGCGCTCG TGCCGTCCCG GTATCTTCGC CGCGCGTGCG
CTATATGCCG AGATCGGCCG CGAGGTCGAA CGCTCCGCGC TCGATTCGGT GTCGGCTCGT
GCGGTGGTCT CGACCGGGCG CAAGCTCGCT GTGCTGTCGC GGATGCTGGC GTTCCAGGAA
ACCCAATGGG CGCCCGCGAA GAATCTGCCG GCCAAGTTGG GCGACATGGA AGAAACCCGC
TTCCTGATCG ATGCGGTGAT CGCCCATCCG GTCCGCGACT TGCAGCCGAT GCCGCAGGTC
AAGCCGATCG AGCAGAAGGT CGCCTGGCTG GTCGACCTGT TCACGCGGCT CGAACGCCGC
GACCAGATGC TGCAACGCAG CCGGGTGTAG
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| Protein sequence | MTVHSDMLAC RVMIKEGSRT FHAASKVLPR RISDPAIALY AFCRVADDAV DLGLDRSNAV
EVLKDRLDRA CRGLPRPYPS DRAFADVIAR FSIPPAIPEA LIEGLEWDSQ GRRFETLSDL
YGYAARVAGT VGVMMTLVMG QRRPDIVARA CDLGCAMQLT NIARDIGEDA RNGRIYMPLS
WMREAGLDPE KWLADPKFTP EIAGIVKRLI DTADALYDRA TLGIANLPRS CRPGIFAARA
LYAEIGREVE RSALDSVSAR AVVSTGRKLA VLSRMLAFQE TQWAPAKNLP AKLGDMEETR
FLIDAVIAHP VRDLQPMPQV KPIEQKVAWL VDLFTRLERR DQMLQRSRV
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