Gene RPD_3757 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3757 
Symbol 
ID4024273 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4194194 
End bp4195132 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content65% 
IMG OID637963961 
Productchlorophyll synthesis pathway protein BchC 
Protein accessionYP_570879 
Protein GI91978220 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases 
TIGRFAM ID[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00485804 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATACCA TCGCGGTCGT CCTCAAGCAG CCGCAACACG TCGAACTCAG TCGCCTGGCT 
CTCACCCCGC CGACTGCTGA CGACGTTGTT GTCGATGTTG CATGGAGCGG TGTCAGCACC
GGTACCGAGC GGCTGTTGTG GTCCGGCCGG ATGCCGGCGT TCCCCGGAAT GGGGTACCCG
CTTGTGCCTG GCTATGAGTC CGTCGGCGAA GTGGTCGAGG CCGGATCGGC AACCGATCTG
AAGCCCGGCC AAATGGTGTT CGTGCCCGGG GCGAAATGCT TCGGCGAAGT CCGCGGTCTG
TTCGGCGCCT CGGCGTCGCG TCTCGTCGTT CCGGCCAAGC GCGTGGTGCC GCTCGATCAG
CAGCTCGGTG AGCGCGGCAT CCTGATCGCG CTCGCCGCCA CTGCCTATCA CGCCATTGCC
GCCCGCAATG CTGCGCCGCC GGACTGCATC GTCGGTCACG GCGTGCTCGG ACGCCTGCTG
GCGCGGATCT CGATCGCGCT CGGCAATCCG CCGCCGGTGG TGTGGGAGAA GAACCCGATC
CGCAGCGGCG GGGCCGATGG CTACGCCGTG GTCGATCCCG AGACCGACGA GCGCCGCGAC
TACAAGAGCA TCTACGATGT CAGCGGCGAT CCAAAATTGC TCGATTCTTT GATCTGTCGC
ATCGCGGCGA CCGGAGAGAT CGTGCTCGCT GGCTTCTACA GCGAGCCTTT GTCGTTCGCG
TTCCCTCCGG CCTTCATGCG CGAAGCCCGG ATCCGGATCG CGGCGGAATG GCAGCCGGCG
GATATCGGCG CCACCAAGGC GCTGATCGAC ACCGGCAAGC TCTCGCTGGA CGGATTGATT
ACTCACCATC AGGAAGCGGC TTCCGCGCCT GACGCCTACC GCATCGCGTT CGAAGATCCC
GCCTGCCTCA AAATGGTTCT GAACTGGAGA TTGTCCTGA
 
Protein sequence
MDTIAVVLKQ PQHVELSRLA LTPPTADDVV VDVAWSGVST GTERLLWSGR MPAFPGMGYP 
LVPGYESVGE VVEAGSATDL KPGQMVFVPG AKCFGEVRGL FGASASRLVV PAKRVVPLDQ
QLGERGILIA LAATAYHAIA ARNAAPPDCI VGHGVLGRLL ARISIALGNP PPVVWEKNPI
RSGGADGYAV VDPETDERRD YKSIYDVSGD PKLLDSLICR IAATGEIVLA GFYSEPLSFA
FPPAFMREAR IRIAAEWQPA DIGATKALID TGKLSLDGLI THHQEAASAP DAYRIAFEDP
ACLKMVLNWR LS