Gene RPD_3744 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3744 
Symbol 
ID4024260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4181654 
End bp4182121 
Gene Length468 bp 
Protein Length155 aa 
Translation table11 
GC content62% 
IMG OID637963948 
ProductTspO/MBR family protein 
Protein accessionYP_570866 
Protein GI91978207 
COG category[T] Signal transduction mechanisms 
COG ID[COG3476] Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.651214 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000360645 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAATCCGA TTTTCGTTGC TGCCGTCGTC GCGGTTCTCG TGGGATTGCT CGGCGGCTCT 
CTGACCGATA CCGGCATATG GTATCAAAGC CTGATCAAGC CATGGTGGCA GCCGCCCGAC
TGGCTGTTCG GGCCTGCCTG GACAGTGATC TTCGCGCTCG CCGCGATGGC GGCGGCCTAT
GCCTGGCGCG GCGCGCGAAC GCGGGCGCAA CGCGAATGGG TGATCGGACT GTTCGCCGCC
AACGGCTTCT TCAACGTGAT GTGGAGCATG CTGTTCTTCA CGGTGCAGCG GCCGGATTGG
GCGTTGATCG AAGTGCCGCT GCTGTGGCTA TCGGTGCTGA TCGGGATCGT GGTGTTCTGG
CGCGGTGCGC GGACCGCAAG CTACTATCTG ATACCTTATC TGGTCTGGGT GACGTTCGCG
ACATATCTGA ACTGGACGGT GGTGCGGCTC AACGCCCCGT TCTCATGA
 
Protein sequence
MNPIFVAAVV AVLVGLLGGS LTDTGIWYQS LIKPWWQPPD WLFGPAWTVI FALAAMAAAY 
AWRGARTRAQ REWVIGLFAA NGFFNVMWSM LFFTVQRPDW ALIEVPLLWL SVLIGIVVFW
RGARTASYYL IPYLVWVTFA TYLNWTVVRL NAPFS