| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3741 |
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| Symbol | |
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| ID | 4024257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4179109 |
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| End bp | 4180431 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637963945 |
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| Product | transcriptional regulator PpsR |
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| Protein accession | YP_570863 |
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| Protein GI | 91978204 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR02040] transcriptional regulator PpsR |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000829732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGACGGTG TGATTCGGGA CGCGACCGTT TCGCCCGCGA TGTCGGGGGA AAGTGTCGAG
GCCTGGCTCG GCCGCTCTTG GACCGAGATC GCCGGCGACA ATGGAGGCGA CAAGATCCGG
CGGATCGTTG AGGACGCCCG GACCAGCGGC ATTTCTGCCT TCCGTCAAAT CAACCAGCGG
TTCCCTTCAG GCGCTGAGAT CCCGATCGAA TTCACCACCA TGCTGCTGGG TGATCGCACC
GGCATGCTGG CGGTCGGCAA GAATTTGCAG GCGGTTGCCG AACTGCATTC GCGTTTGATC
GCGGCGCAGC AGACCATCGA GCGCGACTAT TGGCGGCTCC GCGAAATGGA GACGCGCTAC
CGTCTGGTGT TCGACGCGGC GACCGAGGCG GTGATGATCG TCGCGGCGAA CGATCTGCGT
ATCGTCGAAG CCAATCGTGC GGCAGTCCAG GCGCTGAGCG GGATTGATCG CGGCAACGAC
GATGTGACCG GCCGCGAGAT CCTGCGCGAG ATCGCACCGG TCGATCGGGA AGCCGTACGT
GAGATGCTTC TGCGCATCCG TGATCGCGGC AAGGCGCTCA GCATCCTGGT CCATGTCGGC
CGCGATGCGC GATCCTGGAT GCTGCGCGGG TCGCTGGTGT CCTCGGAGCA GGGACAGGTG
TTTCTGCTGC AATTCGCTCC TGTGGCGGGC GCCATGCCGC GCGGCGACGA CCGCGCGGAG
CCGACGGTCC TCAAGGCCCT GATCGACAGG GTGCCGGATG GCTTTGTCGC ACTCGACGCC
GGCGGCGTGA TCCGCCACGC CAACCAGGCA TTTCTCGATA TCGTGCAGAT CGGCTCGAAA
GGATCTGCGA TCGGCGAGTC GCTCGGTCGC TGGCTCAGTC AACCCGGCGC CGATCTGACG
GCTCTGCTAT CGCATCTGCA ACGCTACAAG ACGGTGCGGT TGTTCCAGAC CACCATCCGC
GGTGAACTCG GCAGCGAGAC CGACGTCGAG ATTTCGGCGG TCGACGGCGA CGACCAGAAC
TACGTCGGCG TGTTGATCCG CAACGTCTCG CGTCGTCTTG GCGCCGGCGA GACTGATGCG
CTTCGTGCCG CGCTGGGCCC GATCAGCAAG CAACTCGGTC GCTCATCGCT GCGCAAGCTG
GTGAAAAATA CCGTGAGTAT TGTCGAGCGA CACTACGTCA AGGAAGCACT CGAACTCACC
AACGGCAACC GCACAGCAAC CGCGGATTTG CTAGGGTTGA GCCGACAGAG TCTCTATGCC
AAGCTCGCGC GCTATGGGCT CGACGACAAG GGAGCCGCCT CCCAAGACGA TACTGAGGAC
TGA
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| Protein sequence | MDGVIRDATV SPAMSGESVE AWLGRSWTEI AGDNGGDKIR RIVEDARTSG ISAFRQINQR
FPSGAEIPIE FTTMLLGDRT GMLAVGKNLQ AVAELHSRLI AAQQTIERDY WRLREMETRY
RLVFDAATEA VMIVAANDLR IVEANRAAVQ ALSGIDRGND DVTGREILRE IAPVDREAVR
EMLLRIRDRG KALSILVHVG RDARSWMLRG SLVSSEQGQV FLLQFAPVAG AMPRGDDRAE
PTVLKALIDR VPDGFVALDA GGVIRHANQA FLDIVQIGSK GSAIGESLGR WLSQPGADLT
ALLSHLQRYK TVRLFQTTIR GELGSETDVE ISAVDGDDQN YVGVLIRNVS RRLGAGETDA
LRAALGPISK QLGRSSLRKL VKNTVSIVER HYVKEALELT NGNRTATADL LGLSRQSLYA
KLARYGLDDK GAASQDDTED
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