| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3740 |
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| Symbol | |
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| ID | 4024256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 4176909 |
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| End bp | 4179107 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637963944 |
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| Product | phytochrome |
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| Protein accession | YP_570862 |
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| Protein GI | 91978203 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.103591 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000116427 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGACGGCTG AAACGCCAAG CTCCCCCGCA TTTGGAACCG CCGATCTTTC GAATTGCGAG
CAGGAGCAGA TTCACCTCGC TGGTTCGATA CAGCCGCACG GCGCTCTATT GGTGATCAGC
GAGCCGGATC ACCGCGTCAT TCAGGCCAGC GCCAACGCCG CCGAGTTCCT CAACCTCGAG
TGTCTGCTGG GCCTGCCGCT GGCCGAGCTT GACGGCGATC TGCTGATGCG GATCCTGCCG
CATCTCGACC CGCCCTCAGA GGGCACGCCG ATCGCAGTAC GCTGCAGGAT CGGCAATCCG
GGGGCCGATT TCGACGGCCT GATTCATCGG CCGGCGGAAG GCGGCCTGAT CGTCGAACTG
GAACGTGCCG GGCCTGCGAT CGATCTGGCG CAAATGGTCG GACCGGCGCT CGAGAAGATC
CGCACCGCCA ATTCGATCCG GGCGCTGTGC GAAGTGACCG CGCAACTGTT TCAGGATCGC
ACCGGCTACG ACCGGGTGAT GGTCTATCGC TTCGACGAGG AGGGCCACGG CGAGGTGTTT
TGCGAACGCC ACGTGCCCGG TCTCGAGTCC TATTTCGGCA ACCGTTACCC CTCCTCCGAC
ATTCCGCAGA TGGCACGACG TTTGTACGAG CGCATCCGCG TTCGCGTGCT GGTCGACGTG
AACTATCAGC CGGTGCCGCT GCAGCCGAGG CTGTCGCCGT TCACCGGGCA GGATCTCGAC
ATGTCGAGCT GTTTCCTGCG CAGCATGTCG CCGATTCATC TGCAATATTT GAAGAACATG
GGCGTTCGCG CCACGCTGGT GGTGTCGCTG GTGGTCGGCG GCAAGCTATG GGGGTTGATC
GCCTGCCATC ACTATCAACC GCGCTTCATC CATTTCGAAC TTCGCGCAGT TTGCGAGCTG
CTTGCCGAAG CGATCGCCAC CCGCATCACT GCGCTCGAGA GCTTCGCGCA GAGCCAGTCC
GAATTGTTCG TTCAGCGTCT CGAGCAGCGC ATGATCGAGG CGATCTCGCG CGAAGGCGAC
TGGCGCGCGG CGATCTTCGA TGCTGCGCAA TCGATCCTGC AGCCGACCGG CGCGGCCGGT
TGCGCGCTGA TTTACGAAGG CCAGGTGACG ACTTCCGGTG AAGTTCCCGC CACCCAGGAC
ATCCGTGAGA TCGCCGCATG GCTCGGCCGC CAACCGAATG CCTCGGTCAT CTCGACGTCG
TCGTTCACAC TCGACGCGCC GGAATTCGCG TCGCTGATCA GCGTTGCGAG CGGCGTCGCC
GGCGCGCCTG TGTCCAACCA GCCGGGCGAA TTCCTGATCT GGTTTCGCCC CGAGCGCGTG
CGCACCGTTA CCTGGGGCGG CGATCCGAAA AAGCCGTTCG TGATCGGCAA TACCCCCGCC
GATCTATCGC CGCGGCGCTC CTTCGCGAAG TGGAATCAGG TGGTGGAAGG TACGTCCGAT
CCGTGGACGC CCGCGGATCT CGCTGCGGTG CGGACGATCG GACAGTCGGT CGCCGACATC
GTGCTGCAAT TCCGCGCAGT GCGCACGCTG ATCGCGCAGG AGCGGCTCGA CCAGTTCTCC
CGTCAGGTGC TGACGTCCGA CCATCCGGTC GTGATCGCGG ACATCGAAGG CAAGATCCTG
CTGGTGAACG AAGCCTTCAC CGCGCTGCTG CCGAAGGAAT GTACGCCGAT CCGCCGGCTC
GACGATCTGG CATCGGCCTT TCTCGAACCC TACGACTTCA TGCGCAGCGT CGGCGAGCTT
ATCAATCACC AGCGCGGTTG GCGCGGCGAA CTGCTGTTGC GCGGCCCCGG CAATGCGGTG
CGTCCGATGA TGGTGCGCGC CGATCCGGTG ATGCCGGCGC GAGATCGGGC GCTTGGTTTC
GTGCTCATCT TCACCGACAA CGCCGATCGC CGGGCCGCTG ACGCGGCGCG CGGCCGGTTT
CAGGAAGGCG TTATCAAGAG CACCCGCGTG AGCAGCTTGC GCCTCGATTC GAAATCGGAC
CTCGTCCACC AGAATCTGTT GTCGGCGCTG GTCGAGAACG CTCAGCTCGC CGCGCTGGAA
ATCACCTACG GTGTCGAAAC CGGGCGAATC GCAGATATGC TCGAGGGCGT TCGCAACTCG
ACGCTGCGCA CCGCGGAAGT CCTCGAGCAT CTGATGTTGC ACGCGTCGCG CACCGCGGTC
GACGACAGCA CGAGCAGAAC TCAGAAGACC AGAAAGTAA
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| Protein sequence | MTAETPSSPA FGTADLSNCE QEQIHLAGSI QPHGALLVIS EPDHRVIQAS ANAAEFLNLE
CLLGLPLAEL DGDLLMRILP HLDPPSEGTP IAVRCRIGNP GADFDGLIHR PAEGGLIVEL
ERAGPAIDLA QMVGPALEKI RTANSIRALC EVTAQLFQDR TGYDRVMVYR FDEEGHGEVF
CERHVPGLES YFGNRYPSSD IPQMARRLYE RIRVRVLVDV NYQPVPLQPR LSPFTGQDLD
MSSCFLRSMS PIHLQYLKNM GVRATLVVSL VVGGKLWGLI ACHHYQPRFI HFELRAVCEL
LAEAIATRIT ALESFAQSQS ELFVQRLEQR MIEAISREGD WRAAIFDAAQ SILQPTGAAG
CALIYEGQVT TSGEVPATQD IREIAAWLGR QPNASVISTS SFTLDAPEFA SLISVASGVA
GAPVSNQPGE FLIWFRPERV RTVTWGGDPK KPFVIGNTPA DLSPRRSFAK WNQVVEGTSD
PWTPADLAAV RTIGQSVADI VLQFRAVRTL IAQERLDQFS RQVLTSDHPV VIADIEGKIL
LVNEAFTALL PKECTPIRRL DDLASAFLEP YDFMRSVGEL INHQRGWRGE LLLRGPGNAV
RPMMVRADPV MPARDRALGF VLIFTDNADR RAADAARGRF QEGVIKSTRV SSLRLDSKSD
LVHQNLLSAL VENAQLAALE ITYGVETGRI ADMLEGVRNS TLRTAEVLEH LMLHASRTAV
DDSTSRTQKT RK
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