Gene RPD_3738 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3738 
Symbol 
ID4024254 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4175168 
End bp4176055 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content64% 
IMG OID637963942 
Productcobalamin B12-binding 
Protein accessionYP_570860 
Protein GI91978201 
COG category[R] General function prediction only 
COG ID[COG5012] Predicted cobalamin binding protein 
TIGRFAM ID[TIGR00640] methylmalonyl-CoA mutase C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0514741 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000397426 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGACT GGAACGAACT CTCGCCCCCG AAGGTCAGCG ACATCGACCG GAGCCAGATA 
CCGGCAAATC CCCGGGATTT TTCGCCACCC GAGCCGATCT GGCGGTATCG GCGGCCGCTG
GATGGCTGCG GTATCGCCCG CTCGGTCCAG ACCCAGATAC TTCCCGAGAT TGGTTTTGCG
CTGCGCTCCA TGTCATCTCC AGCCACTCCC GCTCCAGCCG ACCCGGCCGC GCCGTTCGAG
GTGCAGCAGT TCACGCTTCT GATCATCGGC GCCGACGAGA GTGCCGCCTC CGCCTATGTC
GAGAGTCTTA TCGCGCGAGG CGCCCCAACT GATTTGATCT TCCTCAACCT GCTTGCGCCG
GCTGCACGAC GTCTCGGCGA GATGTGGGAA GCCGACACCG CAGACTTCGC CAATGTCACG
CTCGGCGTCA GTCGCCTGCA GAGAATTCTT CGCCACCTCG GAGAGAACTA TTCCGCTACC
GAGGGCGTTC AACGCATCGG CGCGGTGCTG CTAACAACCA TTACCGGCGA GCAGCACAGC
TTCGGGTTGG CCATGATCGC GGAGTTCTTC CGTCACAACG GATGGGACAT CTGCACCGGC
CCGTTCGCCT CGCATCGCGA ATTGTCAGCG CTGGTCGCAG AGCGCTGGTT CGATGTCGTC
GGCTTCTCGG TGAGCAGCGA TCGGCGGCTC GACGAGCTGA AGCGCGACAT TCACGACGTC
CGACGGGCCT CCCGCAATCG CCGAATCGGC ATCATGGTTG GTGGGCCGTT GCTGGTGCAT
CGGCCGGAAC TATCCGCTTC GCTCGATGCC GATCTGATTG CTAACGAAGG CGCGAGCGCG
CCGCAGCTCG CCCGCGATCT CGTCGCCGCG CTGAAGGGTC GCACCTGA
 
Protein sequence
MTDWNELSPP KVSDIDRSQI PANPRDFSPP EPIWRYRRPL DGCGIARSVQ TQILPEIGFA 
LRSMSSPATP APADPAAPFE VQQFTLLIIG ADESAASAYV ESLIARGAPT DLIFLNLLAP
AARRLGEMWE ADTADFANVT LGVSRLQRIL RHLGENYSAT EGVQRIGAVL LTTITGEQHS
FGLAMIAEFF RHNGWDICTG PFASHRELSA LVAERWFDVV GFSVSSDRRL DELKRDIHDV
RRASRNRRIG IMVGGPLLVH RPELSASLDA DLIANEGASA PQLARDLVAA LKGRT