Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3707 |
Symbol | |
ID | 4024223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 4136854 |
End bp | 4139862 |
Gene Length | 3009 bp |
Protein Length | 1002 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637963911 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_570829 |
Protein GI | 91978170 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.571968 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCCTG ATTCGCCCGA TCCTGCCTTC ATGGCTCCCT ATGCGCCCGA CGACGCTGTG CTGGCGGCGG CGTTGATCGG CTCGGTTCCG ACCGACGCGG GGCACGAAGC ACGGATCGAC CGCACGGCGA CCGAGCTGAT CGAAGCGATC CGCGCCGGCG ACGATCGCCT CGGTAGCGTC GAGCAGATGC TTCGCGAATT TGCACTGTCG ACCAAAGAGG GGCTGGCGCT GATGGTGCTG GCCGAAGCGC TGCTGCGGGT GCCGGATGCT GCGACCGCCG ACGCTTTCAT CGAAGACAAG CTCGCGCAGG GCGACTTCGC GCACCACCGC GTCAAGTCCG AGGCGCTGCT GGTCAACGCC TCGGCCTGGG CGCTGGGCCT CTCGGCGCGC GTGGTGCAGT CCGGCGACAC GCCGCAGGGG ACGCTGGCGG CGCTGGCGAA GCGGATCGGG GCGCCAGCGG TGCGCGCCGC GACGCGGCAG GCGATGCGGC TGATCGGCAA TCACTTCGTA CTCGGCGAAA CGATCGACGC AGCGCTGCAC CGTGCGCAAG CGGATGCGGC CGATGGCGTG CGCTATTCCT ACGACATGCT CGGCGAAGGT GCACGCACGC AAGCCGATGC CGAGCGCTAT TTCGATTCCT ATGCACGGGC GATCGAGGCG ATCGGCAGCA AAGCCGGCAA CGCGCCGCTG CCGTCACGGC CGGGCATTTC GGTGAAACTG TCGGCATTGC ATCCGCGCTT CGAGGCGGTG AGCCGCGACC GCGTGCTGGC CGAGTTGACA CCGCTTCTGA TCGACCTGGC GCGCAAGGCG AAAGCCCACG ACCTCGCCTT CACAATCGAC GCCGAAGAGG CCGACCGGCT CGAACTCTCG CTCGACATCT TCGCCGCCTG CTGCGCCGAT CCGTCGCTCG CCGGGTGGGA CGGCTACGGG CTCGCCGTCC AAGCCTATCA GAAGCGCGCG GCGGCCGTCA TCGACTACGT TGACACGCTC GCGCAGCGAC TGAACCGGCG TCTGATGCTG CGGCTGGTGA AGGGCGCCTA TTGGGACACC GAGATCAAGC GCGCGCAGGA GCGCGGGCTC GACGACTATC CGGTGTTCAC GCGCAAGGCG ATGACCGATC TCAACTACAT GCATTGCGCG GACAAGCTGC TTCGCTTGCG GCCGCGGCTA TTCCCGCAAT TCGCCAGCCA CAATGCGCTG ACGGTCGCGA CTGTGCTCGA GCTCGCCGGC AATGGCGAGG GCTATGAATT CCAACGCCTG CACGGCATGG GCGAGGCGCT GTATGCGCGG CTTCTCGCCG AATATCCCGG ATTGGTGTGC CGGATCTATG CGCCGGTCGG CGGCCACCGC GACCTGCTCG CCTATCTGGT GCGTCGGCTG CTGGAGAACG GCGCCAATTC GTCGTTCGTG GCGCAGGTCG GCGACGAGCA CGTAACGGTC GCGGAATTGC TCCGACGGCC CGCCGAGATC ATCGGGCGGC CCGAGCAGGC GCGAAACCCG CACCTTCCTT TGCCGCGCGA CCTGTATCGG CCGCAGCGTG AGAATTCGCG CGGCATCGAA TTTGGCGATC GCGCGGCGCT GCAACGACTG GTGAGCGAGA TCGCTACAGT GCGGCAAGCG CTGCCGAAGA TCACATCCGC AACACCAGAG ATCGCCGCAG CAGCCGTTGC AACCGCGCGA ACCGGCTTCG TGGAGTGGAG CCGCACGCCG GCGGCGACGC GGGCAAGCGC GCTGGAGCGC GCGGCAGATC TGTTGGACCG TCGACGCGCG CATTTCATCG CTCTGCTGCA GGACGAAGGC CGCAAGACGC TCGACGATTG CATCTCGGAA GTGCGCGAGG CGATCGATTA CTGCCGATAC TATGCGGCCG AGGGCCGCCG CCTGTTCGGC GACGGCATGG CAATGCCAGG ACCGACCGGC GAGAGCAACA CACTGCGTCT GCGCGGACGC GGCGTCATCG TCGCAATCTC GCCGTGGAAT TTTCCGCTGG CGATCTTTGT GGGCCAGATC GCCGCGGCGC TGATGGCCGG CAACTCGGTG GTCGCCAAGC CGGCGGAGCA GACGCCGGTG ATCGCCGACG CCGCCGTGCA ACTGTTGCAC GAGGCCGGCG TGCCGCACGC GGCGCTGCAA CTCGTACAGG GCGACGGCGC GATCGGCGCA GCGCTGGTCG CGCATCGCGA CGTCGCCGGC GTGGTATTCA CCGGCTCGAC CGAGGCGGCG CTGGCGATCA ACCGGGCGCT CGCCGCCAAG GACGGCCCGA TCGTGCCGCT GATCGCCGAG ACCGGCGGCA TCAATGCGAT GATCGTGGAT GCGACGGCTC TGCCCGAGCA GGTCGCCGAC GACGTGGTGA CTTCGGCGTT CCGCTCCGCC GGCCAACGCT GCTCGGCGCT GCGGCTGTTG TTCGTGCAGG ACGATGTCGC GGACCGGATG ATCGAGATGA TCGCCGGCAG CGCCCGCGAA CTACGCATCG GCGACCCGCG CGATCCAGCG ACGCAGATCG GCCCTGTGAT CGACGCCGAG GCGAAGGCGA AGCTCGACGC GCGTATCGCC CGAATGACGC GCGAGGCGCG GGTTCATTTG GCCGGCACCG CCCCGGTGGA CGGCAATTAC GTCGCGCCGC AGATTTTCGA ACTGCGCGAC GCGACGCAGC TCTGCGAAGA AGTCTTCGGC CCGATCCTGC ATGTCGTGCG CTATCCGGCT TCCGGCCTCG ACGACATGCT CGAAACGATC GCACGCAGCG GCTACGCACT GACGCTCGGC ATCCACTCGC GGATCGACGA CACCATCGCA CGCATCATCG ATCGGCTCGC GATCGGAAAC GTCTACGTCA ACCGCAACAT GATCGGCGCC GTCGTCGGCG TGCAGCCATT TGGCGGCTCG GGACACTCCG GCACAGGCCC GAAGGCCGGC GGCCCGAATT ATCTGCCGCG CTTCGCGCTG GAGCAGACGG TGTCGATCAA CACGGCCGCA GCCGGCGGCA ACGCTGCGCT GCTGTCGGGC GGCGAGTAA
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Protein sequence | MPPDSPDPAF MAPYAPDDAV LAAALIGSVP TDAGHEARID RTATELIEAI RAGDDRLGSV EQMLREFALS TKEGLALMVL AEALLRVPDA ATADAFIEDK LAQGDFAHHR VKSEALLVNA SAWALGLSAR VVQSGDTPQG TLAALAKRIG APAVRAATRQ AMRLIGNHFV LGETIDAALH RAQADAADGV RYSYDMLGEG ARTQADAERY FDSYARAIEA IGSKAGNAPL PSRPGISVKL SALHPRFEAV SRDRVLAELT PLLIDLARKA KAHDLAFTID AEEADRLELS LDIFAACCAD PSLAGWDGYG LAVQAYQKRA AAVIDYVDTL AQRLNRRLML RLVKGAYWDT EIKRAQERGL DDYPVFTRKA MTDLNYMHCA DKLLRLRPRL FPQFASHNAL TVATVLELAG NGEGYEFQRL HGMGEALYAR LLAEYPGLVC RIYAPVGGHR DLLAYLVRRL LENGANSSFV AQVGDEHVTV AELLRRPAEI IGRPEQARNP HLPLPRDLYR PQRENSRGIE FGDRAALQRL VSEIATVRQA LPKITSATPE IAAAAVATAR TGFVEWSRTP AATRASALER AADLLDRRRA HFIALLQDEG RKTLDDCISE VREAIDYCRY YAAEGRRLFG DGMAMPGPTG ESNTLRLRGR GVIVAISPWN FPLAIFVGQI AAALMAGNSV VAKPAEQTPV IADAAVQLLH EAGVPHAALQ LVQGDGAIGA ALVAHRDVAG VVFTGSTEAA LAINRALAAK DGPIVPLIAE TGGINAMIVD ATALPEQVAD DVVTSAFRSA GQRCSALRLL FVQDDVADRM IEMIAGSARE LRIGDPRDPA TQIGPVIDAE AKAKLDARIA RMTREARVHL AGTAPVDGNY VAPQIFELRD ATQLCEEVFG PILHVVRYPA SGLDDMLETI ARSGYALTLG IHSRIDDTIA RIIDRLAIGN VYVNRNMIGA VVGVQPFGGS GHSGTGPKAG GPNYLPRFAL EQTVSINTAA AGGNAALLSG GE
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