| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3688 |
|---|
| Symbol | |
|---|
| ID | 4024204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4114949 |
|---|
| End bp | 4116496 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637963892 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_570810 |
|---|
| Protein GI | 91978151 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACG GTGCCGAGAG CCTGGTGCGG ACGCTTGTTC ATGGCGGCGT CGATGTTTGT
TTCGCCAACC CCGGCACCTC GGAAATGCAC TTCGTGGCGG CCCTCGACCG CGTCGAGGGG
ATGCGCTGCG TGCTCGGGCT GTTCGAGGGC GTCGTCACCG GCGCCGCCGA TGGCTATTAC
CGGATGAAGC GCACGCCGGC GTCGACCTTG CTGCATCTCG GCCCCGGCCT CGCCAACGGC
CTCGCCAATC TGCACAACGC CAAGAAGGCG AATTCCGGCA TCGTCAATAT CGTCGGCCAA
CATGCCACCT ACCACATCGA TTACAACGCG CCGCTGACCT CCGACATCGA GGGACTGGCT
CGGCCGATGT CGGCGTGGGT TCGCACTTCT CCGGACGCCC AATCGGTGGC GCGCGACGGC
GCCGCCGCGA TCGCCGCGGC AAAAAGTGCG CCGCCGCAGA TCGCCACGCT GATCCTGCCG
GCCGACACCG CCTGGAACGA GGCCGATGGC ATCGCCGACG TGCCGGCAGA CGCGCAGCGC
CCGAGCTACT CGCCGCATGC CGTCGAGGCG GCGGCGCGGG TGCTGCGCTC CGGCGAGCCG
ACGCTGCTGC TGCTGACCGG CGGTGCGCTC ACCGAGCACG GCCTCGACCT CGCGGCGCGG
ATCGCCGGCA AGAGCGGCTG CCGTGTGATG GGCCAGACCT ACAATCCGCG GATGGCGCGC
GGCCGGGGTC GCTATTCGAT CGAGCGGATT CCCTATGTGA TCGAATCCGC GCTGCCGATC
CTCAAGGACT TCCGCCATAT CGTGCTGGTC GAGGCCAACG ACCCGGTGGC GTTCTTCGCC
TATCCGAACA AGCCGAGCCT GCTGAAGCCT GAGGGCTGCG AGGTGCATCG CATGACCGAG
GGCGGCGAGA ATTCAGTTGC CGCGCTGGAA GCGCTCGCCG GCGCGCTCGG CGCCAAGGCG
CAGGACGCGC AGCCGCAAAC GCTCGCCGAG ATCGCGCGGC CGACCGGCGC GCTGACTCAT
GCCTCGATCG CGCAGGCGAT TGCGATGGCA ATCCCGGAGA ACGCCATCGT GATCGACGAA
TCGATCACTA CCGGCCGCGG GTTCTTTCCG CCGACGGCTG CGGCGCCGCC GCACGACTGG
CTGCAGAACA TGGGCGGTTC GATCGGCTTT TCGCCGCCGG TCGCGGTCGG CGCCGCGGTG
GCGTGCCCGG ATCGCAAGGT GATCTGCTTG GTCGGCGACG GCAGCGCGAT GTACACGCTG
CAGGCGCTGT GGACGCAGGC GCGCGAAAAC CTCGACGTGA CCACGGTGGT GTTCGCCAAC
CGCAAGTACC AGATCCTGCG CGGCGAATTC GACGGCGTCG GCGCCGGGGA GCCCGGCCAG
CGCGCGCAGG ACATGCTGAC GCTCGATCGG CCGGCGCTCG ACTGGGTGTC GCTCGCCAGG
GGCATGGGAG TTCCGGCCCG CGCCGTCTCG AGCGCTGACG AGCTGAACAA GGCTCTGGAT
GCCGGCACCG GCGGCAGCGG ACCGAATCTG ATCGAAGTTC AAATGTAA
|
|---|
| Protein sequence | MMNGAESLVR TLVHGGVDVC FANPGTSEMH FVAALDRVEG MRCVLGLFEG VVTGAADGYY
RMKRTPASTL LHLGPGLANG LANLHNAKKA NSGIVNIVGQ HATYHIDYNA PLTSDIEGLA
RPMSAWVRTS PDAQSVARDG AAAIAAAKSA PPQIATLILP ADTAWNEADG IADVPADAQR
PSYSPHAVEA AARVLRSGEP TLLLLTGGAL TEHGLDLAAR IAGKSGCRVM GQTYNPRMAR
GRGRYSIERI PYVIESALPI LKDFRHIVLV EANDPVAFFA YPNKPSLLKP EGCEVHRMTE
GGENSVAALE ALAGALGAKA QDAQPQTLAE IARPTGALTH ASIAQAIAMA IPENAIVIDE
SITTGRGFFP PTAAAPPHDW LQNMGGSIGF SPPVAVGAAV ACPDRKVICL VGDGSAMYTL
QALWTQAREN LDVTTVVFAN RKYQILRGEF DGVGAGEPGQ RAQDMLTLDR PALDWVSLAR
GMGVPARAVS SADELNKALD AGTGGSGPNL IEVQM
|
|---|
| |