Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3648 |
Symbol | |
ID | 4024162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4072779 |
End bp | 4074053 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637963852 |
Product | outer membrane efflux protein |
Protein accession | YP_570772 |
Protein GI | 91978113 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.856557 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCATAA GAAGCGTCGC CACGCTGTTC GCGTGCGCAT CGGCACTGCT GGTCAGCCCT TGGCTGACGA GCGTGTCCCA TTCGCAGACC ATCACGTTGC AGACCGCCCT CCAGCGCGCG CTGGCCACCA GTCCGCGCCT GACGGCCGCC GAACGCGACG TCGGCATCGC GTCCGGCCAG CGGATCCAGG CCGGCGCGCT GATCAATCCG GAGGTCTCCT ACGAACAGGA CAATTCCTTC GGATCGCGGT CGTATCGCGG AACGCGGTCG GCGGAAACGA CGCTGCAGAT CAGCCAGCTT TTCGAGCTTT TCGGCAAGCG CGACGCGCGC ATTGCGGCGG GCCAGGCGGG CGTGGAGACG GCCACGATCC AGCGCAAGGC GATTCGCCTG GAAGTGCTGG CGGAGACCGC CGGTGCCTTC CTCAACGTGC TGGGCGCGCA GCGCCGGATT CAGATCCTCG ACGAGCAGAT CGCCGAGATC GACCGCATCA CGCCGTTGCT GCAGCGGCGG GTCGACGCAG GCGCCTCGTC GTTGGCCGAA ACCGGACGCG CGGAAGTGGC TTCGGCCCTT GTGAAGGCCG ACCGGGAGCG CGTCCGATCG CTTCTCGCGA CTTCGAGACG CGAGCTGGCC GTGCTGATGG GCGACACCGC GCCGAAGTTT ACGGCCGTGT CCGGACGCCT CGACGCCACC GGGCGCCCGC CATCCTTCAA CGCCGTGATC GCGGCGATCG ATGCGAACCC CCAGTTGATG CGCTGGACCG CCGTCTACGC GCAGCGCAAC GCGGAGCTTC TAATCGCCCG GCTGCGTCCC TATCCGGACG TCCGGGTCAA CGCAGGCTGG CGGCACTTCA ACGATACCGG CGACGACGCC GTCCGTCTCG GCGTCACAGT CGCCATCCCG GTCTTCGACC AGAACCAAGG CAACATCCTT TCTGCGCAGG AGAGCCTTGC AAAGACCCGT GCTGAGCGTG AGGCCAATCG CAACTCGTTG ATCGTGTTGG CCGGGCGGGC TTACGACACC TTGCAGGGTT CGCTGCGCGA ACTGGCCATC CTCAGGGAAA CCGCCATCCC GAAATCGCGC CAGGCATCCG ATGCGATCTT CGAGGGGTAC GGCCAAGGCC GCTTCTCACT GCTTGAGGTC CTCGATGCTC AGGCCAGCGT CGCCCAGGCA CGCCTGCGCG AGCAGGAGGC CCAGCAGAAC TTCCACGTCG CCGTCGCCAT CATCGAGGGG CTCGTCGGCA ATCCATTCGC ACTGGCGCGG GAGAGCGCAC GATGA
|
Protein sequence | MSIRSVATLF ACASALLVSP WLTSVSHSQT ITLQTALQRA LATSPRLTAA ERDVGIASGQ RIQAGALINP EVSYEQDNSF GSRSYRGTRS AETTLQISQL FELFGKRDAR IAAGQAGVET ATIQRKAIRL EVLAETAGAF LNVLGAQRRI QILDEQIAEI DRITPLLQRR VDAGASSLAE TGRAEVASAL VKADRERVRS LLATSRRELA VLMGDTAPKF TAVSGRLDAT GRPPSFNAVI AAIDANPQLM RWTAVYAQRN AELLIARLRP YPDVRVNAGW RHFNDTGDDA VRLGVTVAIP VFDQNQGNIL SAQESLAKTR AEREANRNSL IVLAGRAYDT LQGSLRELAI LRETAIPKSR QASDAIFEGY GQGRFSLLEV LDAQASVAQA RLREQEAQQN FHVAVAIIEG LVGNPFALAR ESAR
|
| |