| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3623 |
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| Symbol | |
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| ID | 4024137 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4039143 |
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| End bp | 4040516 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637963827 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_570747 |
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| Protein GI | 91978088 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.25462 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCG ACGCACCGGC CGATACGCCC CTGCCCGCTG CTTCGGCCAA CCGGCTGCTG
ACCGCGCCGA TCCTCCCGAC GTTGATCCGG CTGGCGATCC CGAATGTGAT CGCGATGGTC
GGCACCGCCG TGGTCACCGT CGCCGAGACC TCCTATATCG GCCGGCTCGG CACCGAGCCG
CTGGCGGCGA TCGCGCTGGT GTTCCCATTC GCGATGCTGA CGCAAATGAT GTCGGCCGGC
GCGATGGGCG GCGGCGTGTC GTCGTCGGTC AGTCGCGCGC TCGGCGCCGG CGATCGCACG
CGCGCCGAGG TGCTGGCGCT GCACGCCATC CTCATCGGCG TCTGCGGTGG CCTCGTCTTC
ACGCTGATCA TGCTGGTGTT CGGCCGGTCG TTGTTTTCGC TGCTCGGCGG CCGTGGCGAG
GTACTGGAGC AGGCGTGCAG CTATTCGGTC GTGCTGTTCT CGGGCGCGGT GTCGATCTGG
CTGGTCAACA CGCTGGCCTC GGTGCTGCGC GGCACCGGCG ACATGATTCT GCCTGCGGCC
ACGCTGCTCG CCGTCGCGGC GCTCCAGATC GTGATCGGCG GCACGTTCGG GCTCGGCCTG
TTCGGACTGC CGCGGCTCGG GATGGGGGGC GTCGCCTCCG GTCAATTGAT CGCGTTCTCG
CTCGGCGCGG TGTTTCTGCT CCTCTACATG GCGAGCGGAC GCGGCCGGTT GCGCCTGCGG
GTGAAGTCGT TCGCGTTTCA GCGCGAAATG TTCATCGACA TTCTCAAGGT CGGCGCGATG
GCCTGCCTCG CGCCGCTGCA GTCGGTGCTG ACGATCCTGA TCTTCACCAA GATTCTCGCG
ACGTTCGGCA CCGCGACGCT GGCCGGCTAC GGCATCGGCT CCCGTCTCGA ATTTCTGCTG
ATCCCGATCG CTTTCGCGTT CGGCGTCGCC TCGATCCCGA TGGTCGGAAT GGCCGTCGGC
GCGGGCATGA TCGCGCGGGC GCGCCGCGTC GCCTGGACCG CCGGCGCAGT GTCGGCGCTG
ATCATCGGCC TGGTCGGCGT GGCGCTGGCA ATCCAGCCGT CGCTGTGGGT GTCGCTGTTC
ACCAGCGATC CTGCCGTGGC CGCCGCGGCG CATTCCTATT TTGGCTGGGC CGGCCCCGGC
TTCGCCTTCT TTGGGCTCGG CGTGACGCTG TATTTCGCCT CGCAGGGCGC CGCGAAGGTC
GGCGGTCCGG TGCTCGCTGC GACCGCGCGG CTGCTGCTGG TCGCGGTCGG CGGCACGGCG
CTGGTCGCGG CCGACGCGCC GGCCTCGGCG CTGTTCGCAC TGGTTGGCGC CGCGATGGTG
GTCTACGGTC TCGGCACCGC CGGCGCGATA TGGCTGACAC GCTGGGTCAA GTGA
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| Protein sequence | MTIDAPADTP LPAASANRLL TAPILPTLIR LAIPNVIAMV GTAVVTVAET SYIGRLGTEP
LAAIALVFPF AMLTQMMSAG AMGGGVSSSV SRALGAGDRT RAEVLALHAI LIGVCGGLVF
TLIMLVFGRS LFSLLGGRGE VLEQACSYSV VLFSGAVSIW LVNTLASVLR GTGDMILPAA
TLLAVAALQI VIGGTFGLGL FGLPRLGMGG VASGQLIAFS LGAVFLLLYM ASGRGRLRLR
VKSFAFQREM FIDILKVGAM ACLAPLQSVL TILIFTKILA TFGTATLAGY GIGSRLEFLL
IPIAFAFGVA SIPMVGMAVG AGMIARARRV AWTAGAVSAL IIGLVGVALA IQPSLWVSLF
TSDPAVAAAA HSYFGWAGPG FAFFGLGVTL YFASQGAAKV GGPVLAATAR LLLVAVGGTA
LVAADAPASA LFALVGAAMV VYGLGTAGAI WLTRWVK
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