| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3575 |
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| Symbol | |
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| ID | 4024089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3981014 |
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| End bp | 3981853 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963779 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_570699 |
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| Protein GI | 91978040 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0912672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTCC AGACCACCAC CGAACCGGCC GAGCACCAGG GCGTCGCGCT GGGTAGCTCG
TTCTACGCGG CGATGCGCAT CCTGCCGCGC CCGCAGCGCG AGGCGATGTT TCAGGTCTAC
AGCTTCTGCC GCTATGTCGA CGACATCGCC GATTCCGACG AGCCGCGCGA TCTGCGGCGG
GCCGGATTGC AGCGCTGGCG CGACGACGTC GAGGCGCTGT ATCGCGGCGC GCCGCCGCCG
CGGCTTGCGG ACTACCAAGG CTCGGTGCGC GCATTCGGCC TGAAGCGCGA GGATTTTCTC
GCGATCATCG ACGGCATGGA AATGGACGTC ACCGCCGACA TTCGCGCCCC GAACGATGCG
ACGCTCGATC TGTACTGCGA TCGGGTCGCC AGCGCGGTCG GCCGGCTGTC GGTGCGGATC
TTCGGCCTGC CGGAACAGGA CGGCATCCTG CTCGCGCATC ATCTCGGCCG CGCGCTGCAA
CTCACCAACA TCCTTCGCGA CATCGACGAA GACGCCGAAC TCGGCCGGCT GTATCTGCCG
CGCGAGGGCC TGGTCGCGGC GGGTATCACC AGCATCGATC CGATGCTTGT CGCCAGGGAC
CCTGCGTTGC CGAACGTCTG CGCGCCGCTG GTCGCGCGCG CGCTGAAGCA TTTCGACGCC
GCCGATGTGG TGATGAGCCG CAATCCGCGC CGGCTGGTGA AGGCGCCGCG GATCATGGGC
AAGTACTATT TTTCGATCCT TCAACTGCTG ATCGCGCGCG GCTTCGCGCC GCCGCGGGCG
CCGGTCAAGC TCGGCAAGGC GTCGAAGATC GCCATCCTGC TGCAATACGC GGTGGTCTGA
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| Protein sequence | MTLQTTTEPA EHQGVALGSS FYAAMRILPR PQREAMFQVY SFCRYVDDIA DSDEPRDLRR
AGLQRWRDDV EALYRGAPPP RLADYQGSVR AFGLKREDFL AIIDGMEMDV TADIRAPNDA
TLDLYCDRVA SAVGRLSVRI FGLPEQDGIL LAHHLGRALQ LTNILRDIDE DAELGRLYLP
REGLVAAGIT SIDPMLVARD PALPNVCAPL VARALKHFDA ADVVMSRNPR RLVKAPRIMG
KYYFSILQLL IARGFAPPRA PVKLGKASKI AILLQYAVV
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