Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3572 |
Symbol | |
ID | 4024086 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3977017 |
End bp | 3977757 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637963776 |
Product | hypothetical protein |
Protein accession | YP_570696 |
Protein GI | 91978037 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0775] Nucleoside phosphorylase |
TIGRFAM ID | [TIGR03468] hopanoid-associated phosphorylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.267863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGATTCTGG GGGCTAGGGG CGACGCGGCC GCGGGTTTTG ATCCGCGGCC GGTTCTGATT GTGACGGGGC TCATCCAGGA AGCGCGGATC GCAGCGGGAC CGGGCTTCAC CGTCATCTGC AGCAGCAGCG ATCCGAAGCA ATTGCGGATG ATGATGGCGG ATTTCGATTC GTCGTCGATC CGCGGCGTGA TCAGCTTCGG CGTGGCCGGC GGGCTCGACC CCTCGCTGCG CTCCGGCGAT ATCGTGATCG CGACCGAGGT GATGGCGGGC GACCGCCGTT GGCAGTCGGA AATCGCGCTG AGCGATGAAC TGGTGAGCAG CGCCGGCCTC GGCCGTCAGC GGGTGGTGCG CGGCGGGCTG GTCGGCGTCG AGCAGGTGGT GGCGGCGCGC GACTCGAAAG CGGCGCTTCG CTCCGAAACC GGCGCAGCCG CGGTCGATAT GGAAAGCCAC ATTGCCGCCG ATTTCGCCGC GATGGCCAAG CTGCCCTTCG CGGCGCTACG TGTGATCAGC GATCCCGCCA ACCGCAGCCT GCCGCAGATG GTGTCGACCG CGATCAAGCC GAACGGCGAC ATCGATCTGC GGAAGGTGCT GCGCGGGCTG GCCCGCCACC CGACATCGAT CCGGTCGCTG GTTTCGACCG GAATCGACTT CAATCGGGCG CTTCGCAGCC TACGCGGCTG TCGAAGCTTC GTGCTTGGCG CCGTGATTGG CAGCGGCAGC CTCGTCGCGG CGGATCTCTG A
|
Protein sequence | MILGARGDAA AGFDPRPVLI VTGLIQEARI AAGPGFTVIC SSSDPKQLRM MMADFDSSSI RGVISFGVAG GLDPSLRSGD IVIATEVMAG DRRWQSEIAL SDELVSSAGL GRQRVVRGGL VGVEQVVAAR DSKAALRSET GAAAVDMESH IAADFAAMAK LPFAALRVIS DPANRSLPQM VSTAIKPNGD IDLRKVLRGL ARHPTSIRSL VSTGIDFNRA LRSLRGCRSF VLGAVIGSGS LVAADL
|
| |