Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3561 |
Symbol | |
ID | 4024075 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3960396 |
End bp | 3961625 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637963765 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_570685 |
Protein GI | 91978026 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTTTT CCAGTTCGAG ACTGGCTGTT CTCTCGGCCG CCGCAATGCT GTTTGCGGCG TCCAGCCACG GCGCCCTTGC CCAGAAGAAA TACGACCCCG GTGTCAGCGA CACCGAAATC AAGATCGGCA ATGTCGAGGC CTATAGCGGT CCGGCCTCGG CTTACGGCGT CATCGGCAAG ACCGAGGACG CCTATTTCAA GATGATCAAC GATCAGGGCG GCATCAACGG CCGCAAGATC AAGTTCATCA GCTATGACGA CGCCTACTCG CCGCCAAAGA CGGTGGAACA GGTCCGCAAG CTGATCGAGA GTGACGAAGT GTTCCTGGTG TTCAACGCGC TCGGCACGCC GACCCAGACC GCGGTGCAGA AGTATCACAA CGTCAAGAAG GTCCCGCAAT TGTTCGTTGC AACCGGCGCG AGCAAATGGA ACGACCCGAA GGACTTCCCC TGGTCTATGG GCTTCCAGCC GAGCTACCGC GTCGAAGCGC GAGTCTTCGC CAAGTACATT CTCAAGGAGA AACCGAACGC CAAGGTCGCG GTGTTCTACG CAAATGACGA TTTCGGCAAG GACTATCTGA TCGGGCTCAA GGACGTGTTC GGCGCCAACA GCTCGAAAAT CATCGTCGCC GAGGAAAGCT ACGAGACCTC CGAGCCGTCA ATCGACGCCC ATATCGTCAA GCTGAAGGGC ACCGGCGCCG ACGTGTTCGT CAACATCTCG ACGCCGAAAT TCGCCGCCCA GGCGATCAAG AAGATGGCCG AGCTCGACTG GAAGCCGATG CACCTGATGA CCGACGTGTC GATTTCGATC GGCGCGGTGA TGAAGCCCGC CGGCCTCGAC GCCTCGGAGG GCGTGCTGTC CGCAGGCTAC CTCAAGGACG CCTCGGATTC GCAGTGGGAC AACGACGAGG GCATGAAGAA ATTCAAGGCC TTCCTCGACA AGAACATGCC CGGCGCCAAT ATCGCCGATA CCAACCTCGT CTACGGCTAT ACCGCAGCGC AAACCATGGT GCAGGTGCTG AAGCAGGCCG GCGACAATCT GACCCGCGAG AACGTGATGA AGCAGGCGGC CAGCATCAAG GACTTCGCCG CCGACACCCT GCTGCCTGGG ATCAAGATCA ATACCTCGGC GACCGACTTC GCACCGATCG AGCAACTGCA GATGATGCGG TTCACCAAGG GCAAGTGGGA GATGTTCGGC GAGATCATCA GCGCCGAAAC CGGCGGCTGA
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Protein sequence | MSFSSSRLAV LSAAAMLFAA SSHGALAQKK YDPGVSDTEI KIGNVEAYSG PASAYGVIGK TEDAYFKMIN DQGGINGRKI KFISYDDAYS PPKTVEQVRK LIESDEVFLV FNALGTPTQT AVQKYHNVKK VPQLFVATGA SKWNDPKDFP WSMGFQPSYR VEARVFAKYI LKEKPNAKVA VFYANDDFGK DYLIGLKDVF GANSSKIIVA EESYETSEPS IDAHIVKLKG TGADVFVNIS TPKFAAQAIK KMAELDWKPM HLMTDVSISI GAVMKPAGLD ASEGVLSAGY LKDASDSQWD NDEGMKKFKA FLDKNMPGAN IADTNLVYGY TAAQTMVQVL KQAGDNLTRE NVMKQAASIK DFAADTLLPG IKINTSATDF APIEQLQMMR FTKGKWEMFG EIISAETGG
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