Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3560 |
Symbol | |
ID | 4024074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3958898 |
End bp | 3960133 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637963764 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_570684 |
Protein GI | 91978025 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.726041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGACTT TCCGTTCGCG CGCGCTCGTC TTTTCAGCAG CCGTCGCGGT CAGCTTCGCA GCGTTCAACG GCGCTGCCCA TGCTCAAAAG AAATACGACA CCGGCGCGTC CGATACCGAG ATCAAGATCG GCAACGTCAT TCCCTACTCA GGCCCGGCGT CGGCCTACGG CACGATCGGC AAGACCGAAG AAGCCTATTT CAGGATGGTC AACGACAAGG GCGGCATCAA CGGCCGCAAG GTCACCTTCA TCAGCTATGA CGACGCCTAT TCGCCGCCGA AAGCCGTCGA GCAGGTCCGC AAGCTGGTGG AGAGCGACGA GGTGCTCGTG GTGTTCAACC CGCTCGGCAC GCCGTCCAAC ACCGCGGTTC AGAAATATCT CAACGCCAAG AAGGTGCCGC AGCTGTTCGT CGCCTCCGGC GCGACCAAGT GGAACGACCC GAAGAACTTC CCCTGGACGA TCGGCTGGCA GCCGTCCTAC CAGAGCGAAG CGCAGATCTA CACCAAGTAT CTGCTCAAGG AGAAGCCGGA CGCCAAGATC GGCATCCTCT ATCAGAACGA CGATTTCGGC AAAGACTACC TGAAGGGCAC CAAAGACGGG CTCGGCGCCA AGGCCGCCTC GATGATCGTC GCCGAGGAAA GCTACGAAAT CTCCGCGCCG ACCATCGACA CCAACATCGT CAAGCTGAAG TCGGCCAATC CCGACGTCGT GCTGATCTAC ACCACGCCGA AATTCGGCGC GCAGACCATC AAGAAGATCG CCGAGCTGAG CTGGAAGCCG ATGATCATCA TCACCAACGT CTCGGCCTCG GTCGGCAGCG TGATGCGGCC CGCCGGCTTC GAGAACGCCC AGGGCGTGCT GTCGGCCAAC TACGTCAAGG ACGCCACCGA CGCGCAATGG GACAACGACC CCAAGTTCAA GAACTGGCAC GCCTTCGTCG AGACCTACAT GCCGGGCGCG GCCAAGACCG ACAGCAACAT GGTGTACGGC TACGGCGCCG CCCAGACGCT GCACAAGGTG CTCGAGATGT GCGGCGACGA CCTGACCCGC GCCAATGTGA TGAAGCAGGC GGCCAACCTG AAGAACTTCG AGACCGACAC CCTGCTGCCC GCCATCAAGA TCAACACCTC GGCGACCGAC TTCGCCCCGA TCAGCCAACT CCAGATGATG CGCTTCAAAG GCGAGCGCTG GGAGCGGTTT GGCGAGATCA TCTCGGGCGA CGTCGCCGTC GACTAA
|
Protein sequence | MPTFRSRALV FSAAVAVSFA AFNGAAHAQK KYDTGASDTE IKIGNVIPYS GPASAYGTIG KTEEAYFRMV NDKGGINGRK VTFISYDDAY SPPKAVEQVR KLVESDEVLV VFNPLGTPSN TAVQKYLNAK KVPQLFVASG ATKWNDPKNF PWTIGWQPSY QSEAQIYTKY LLKEKPDAKI GILYQNDDFG KDYLKGTKDG LGAKAASMIV AEESYEISAP TIDTNIVKLK SANPDVVLIY TTPKFGAQTI KKIAELSWKP MIIITNVSAS VGSVMRPAGF ENAQGVLSAN YVKDATDAQW DNDPKFKNWH AFVETYMPGA AKTDSNMVYG YGAAQTLHKV LEMCGDDLTR ANVMKQAANL KNFETDTLLP AIKINTSATD FAPISQLQMM RFKGERWERF GEIISGDVAV D
|
| |