| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3558 |
|---|
| Symbol | |
|---|
| ID | 4024072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3956238 |
|---|
| End bp | 3957248 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963762 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_570682 |
|---|
| Protein GI | 91978023 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.288511 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCT TGCAGGAAAT CGTCGACACC CCGCCGATCG AGACCACGCC GAAGAAGTAT
ATGGCGCTGG GCAACTACGC CTCGGTCGTG GTGGTCATAT TGCTGTGCGT CGCACCGCTG
ATCGCCAAGA ACTTCGTCAT CTTCCAGATG ACGATGGTTC TGATCTACGC CATCGCCGTT
CTGGCGCTGA ACATCCTGAC CGGCGGCAGC GGTCAGTTCT CACTCGGCCA GAGCGCGTTC
TATGCGCTCG GCGCCTACAC CTCGGCGATC CTGATGGAGG TCGGCGGCGT CAACTACGCT
TTGACGCTGC CGGTCGCCGG CGGGATCTGC TTCATCGCGG GCTATCTGTT CGGACTGCCG
GCGTTGCGGC TCAGCGGCAT CTATCTGGCG CTCGCGACCT TCGCGCTCGC CACCGCGATG
CCGCAGCTCC TCAAGCTGCA TTATTTCGAA GCCTGGACCG GCGGTGTGCA GGGCCTGGTC
ATCACCAAGC CCGACGCGCC GTTCGGCCTG CCGCTGTCGC AGGACATGTG GCTGTACTAC
TTCGTGCTCG CCGTCTCGAT GGTGATCTAC GTCGCCTCGG TCAACCTGCT GAAGTCGCGC
TCCGGCCGCG CCATGATGGC GATCCGCGAT AACGAGATCG CCGCCTCGGC GATGGGCGTC
GACGTGGCGC TGTACAAGAC GCTGGCGTTC GGCGTCTCGG CCGGCATCAC CGGCGTCGCC
GGCGGTCTCG GCGCCATCGC GGTGCAGTTC GTGGCGCCGG ACAGCTACAC GATCCAGCTC
GCGATCGCGC TGTTCCTCGG CATGGTGGTC GGCGGTGTCG GCTGGCTGCC GGGCTCGATC
ATCGGCGCGG CGTTCATCGT GTTCGTGCCG AACATCGCCG AGCAGTTCTC CAAGGGCCTG
TCCGGCGCGG TGTTCGGCCT GATCCTGATC CTGATCATCT TCCTGCTGCC GCACGGCTCG
CGGCAGGTCG CCTACTCGGT CCAGGGCTGG ATCCACAAAT TGAGAAAATG A
|
|---|
| Protein sequence | MSALQEIVDT PPIETTPKKY MALGNYASVV VVILLCVAPL IAKNFVIFQM TMVLIYAIAV
LALNILTGGS GQFSLGQSAF YALGAYTSAI LMEVGGVNYA LTLPVAGGIC FIAGYLFGLP
ALRLSGIYLA LATFALATAM PQLLKLHYFE AWTGGVQGLV ITKPDAPFGL PLSQDMWLYY
FVLAVSMVIY VASVNLLKSR SGRAMMAIRD NEIAASAMGV DVALYKTLAF GVSAGITGVA
GGLGAIAVQF VAPDSYTIQL AIALFLGMVV GGVGWLPGSI IGAAFIVFVP NIAEQFSKGL
SGAVFGLILI LIIFLLPHGS RQVAYSVQGW IHKLRK
|
|---|
| |