| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3552 |
|---|
| Symbol | |
|---|
| ID | 4024066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3948818 |
|---|
| End bp | 3950470 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637963756 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_570676 |
|---|
| Protein GI | 91978017 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR03205] dicarboxylate--CoA ligase PimA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATC CCGGCGAGCA GTTCTATCCT GAAGGCGTGC GCTGGGATGC GCCGATCGCG
AAGGGCACAT TGCCGGATCT GTTGGCGGAG GCGGCGCAGC AATTCGGGCC GCGGCCGGCG
CTGGAGTTCC GCGATCGGCA GATCAGCTAC ACGAAGCTCC ACGATCTGGC CGGGACAGCC
GCCGCGGCGC TGCTACGCGC CGGATACGGC GCCGGCTCCT CGGTCGCGCT GTTTCTCGGC
AACACGCCCG ACCACCCGAT CAATTTCTTC GGCGCGCTGA AGGCGGGCGC CCGCATCGTG
CATCTGTCGC CGCTCGACGG CGAGCGCGCG CTATCGCACA AGCTCACCGA TTCCGGCGCG
CGCGTGCTGA TCACCACCGA CTCCGCGGCG CTGCTGCCGA TGGCGCTGAA GTTCCTCGAC
AAGGGTCTGC TCGACCGCCT GATCGTCTGC GCCGACGACG ATTGGGGCGC GGTCGGCAAT
CCGCACGCCG CGCTGCCGGT CGATCCGCGC GTCGTGCGCT ATGCGGATTT CGTCAGGGAC
GCGCAGCAGC CCGCCAGTTG GCCGGAGGTC TCGCCCGACG ACATCGCGCT GCTGCAATAC
ACCGGCGGCA CCACCGGCCT GCCGAAGGGG GCGATGCTTA CCCACGCCAA CCTGACCTCG
GCAGTGTCGA TCTACGATGT CTGGACTCTG GTACGCGGCG AGGGCGTCCA GCGCGTGATC
TGCGTGTTGC CGCTGTTCCA CATCTACGCG CTGACGGTGA TTCTGCTGCG CTGCCTGAAG
ATGGGCGACC TGATCTCGCT GCATCAGCGC TTCGAGGTCG CCGCGGTGTT CCGCGACATC
GAGGAGAAAC GCGCCACCGC ATTTCCCGGC GTCCCGACGA TGTGGATCGC GCTCGCCAAC
GATCCGTCGC TGGAGAGTCG CGATCTGTCG TCGCTGACGA TGGCGGGCTC AGGCGGCGCG
CCGCTGCCGG TCGAAGTCGC GCGGCTGTTC GAGCGCAAGA CCAAGCTCAA GCTCAAGAGC
GGCTGGGGCA TGACCGAGAC CTGCTCGCCC GGCACCGGCC ATCCGCCGGA AGGCCCGGAT
AAGCCCGGCT CGATCGGATT GATGCTGCCG GGAATCGAGA TCGACGTCGT CGCGCTCGAG
GATTCGAAAA AGGTACTTCC GCCCGGCGCA GTCGGCGAGC TCAGGATCCG CGGCCCGAAC
GTCACCAAAG GGTACTGGAA CCGGCCGCAG GAAACCGCGG AGTCGTTTGT CGGCGACCGT
TTCCTCACCG GCGATATCGG CTATATGGAC CCGGACGGCT ATTTCTTTCT GGTCGACCGC
AAGAAGGACA TGATCATCTC CGGCGGTTTC AACGTCTATC CGCAGATGAT CGAACAGGCG
ATCTATGAAC ACCCCGCGGT GCAGGAAGTG ATCGTGATCG GCATCCCCGA CGCTTATCGC
GGCGAGGCGG CGAAGGCGTT CATCACGCTG CGCGCCGGTG CGGCCCCGTT CACGGTCGAG
GAGCTGCGCG ACGCCCTCGC CGGCAAGCTC GGCAAGCACG AGTATCCGGC CGCTGTGGAA
TTCGTCGCCG AATTGCCGCG CACCCCGGTC GGCAAATTGT CTCGCCACGA ACTACGCAAC
CAGCTTTCCA AATCCACCAA CCAGAGCCAA TAG
|
|---|
| Protein sequence | MTHPGEQFYP EGVRWDAPIA KGTLPDLLAE AAQQFGPRPA LEFRDRQISY TKLHDLAGTA
AAALLRAGYG AGSSVALFLG NTPDHPINFF GALKAGARIV HLSPLDGERA LSHKLTDSGA
RVLITTDSAA LLPMALKFLD KGLLDRLIVC ADDDWGAVGN PHAALPVDPR VVRYADFVRD
AQQPASWPEV SPDDIALLQY TGGTTGLPKG AMLTHANLTS AVSIYDVWTL VRGEGVQRVI
CVLPLFHIYA LTVILLRCLK MGDLISLHQR FEVAAVFRDI EEKRATAFPG VPTMWIALAN
DPSLESRDLS SLTMAGSGGA PLPVEVARLF ERKTKLKLKS GWGMTETCSP GTGHPPEGPD
KPGSIGLMLP GIEIDVVALE DSKKVLPPGA VGELRIRGPN VTKGYWNRPQ ETAESFVGDR
FLTGDIGYMD PDGYFFLVDR KKDMIISGGF NVYPQMIEQA IYEHPAVQEV IVIGIPDAYR
GEAAKAFITL RAGAAPFTVE ELRDALAGKL GKHEYPAAVE FVAELPRTPV GKLSRHELRN
QLSKSTNQSQ
|
|---|
| |