| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3549 |
|---|
| Symbol | |
|---|
| ID | 4024063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3944928 |
|---|
| End bp | 3946070 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637963753 |
|---|
| Product | acyl-CoA dehydrogenase-like |
|---|
| Protein accession | YP_570673 |
|---|
| Protein GI | 91978014 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | [TIGR03203] pimeloyl-CoA dehydrogenase, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTTG ATTTGTCGGA AGAGCAGCGG CTGCTCAAGG AGAGCGTCGA GGGCCTGTTG
AAGACCTCGT ACGATTTCGA CAGCCGCAAG AAATACGCGA AGGAAAAGGA CGGCTGGAGC
CGCGACGTCT GGGGCAAGTT CGCCGAGCAG GGTCTGCTCG GCCTGCCGTT CTCGGAAGAG
GACGGCGGCT TCGGCGCCGG CGCGGTCGAG ACCATGATCG TGATGGAGGC ACTCGGCCAT
TCGCTGGTGC TCGAGCCGTA TCTGCCGACG GTCATTCTCG CCGGCGGCTT CCTGCGCCGC
GCAGGCTCGG CCGAGCAGAA GGCCGCGCAT CTGCCCGGCA TCATCGATGG CTCGAAGACG
TTTGCATTCG CGCAGCTCGA GAAGAACTCG CGCTGGGACC TCGGCGACGT CGCCGCTACC
GCCAAGAAGA AGGGCGACGG CTGGATCATC GACGGCGAGA AATTCGTGGT GCTGAACGGC
GAGGCGGCCG ATACGCTGGT GGTCACCGCG CGCACCTCGG GCGGCCAGCG TGACCGCAAC
GGAATCGGCG TGTTTCTGGT GCCGGCGAAC GCCAAGGGCG TCTCGCGCAA GGGCTACCCG
ACCCAGGACG GCCAGCGCGC CGCCGACATC ACCTTCACCG GCGTCGAAAT CGGCGCCGAC
GCGGCGATCG GCGATCCGGC CAACGGCCTG CCGCTGATCG AGCAGGTGGT CGACGACGCC
CGCTCGGCGC TGTGCGCCGA GGCGGTCGGC GCGATGGATG AATCGCTCAC CACCACGGTC
GAGTACATCA AGACCCGCAA GCAGTTCGGC GTGCCGATCG GCAGCTTCCA GGTGCTGCAG
CATCGCGCCG CCGACATGTT CGTAGCCGCC GAGCAGGCCC GCTCGATGGC GATGTTCGCC
ACCATGGCAG CGGATTTCGA CGACGCGAAG GAACGCGCCA GCGCGATCGC CGCGGCCAAG
GTGCAGATCG GCAAATCCGC CAAATTCGTC GGCCAGCAGT CGATCCAGCT CCATGGCGGC
ATCGGCATGA CGATGGAAGC CAAGATCGGC CATTACTTCA AGCGGCTGAC CATGATCGAG
AGCAGTTTCG GCGACACCGA CTATCACCTC GCCCGCGTCA GCGAGTCCGG CGGGCTGATC
TGA
|
|---|
| Protein sequence | MDFDLSEEQR LLKESVEGLL KTSYDFDSRK KYAKEKDGWS RDVWGKFAEQ GLLGLPFSEE
DGGFGAGAVE TMIVMEALGH SLVLEPYLPT VILAGGFLRR AGSAEQKAAH LPGIIDGSKT
FAFAQLEKNS RWDLGDVAAT AKKKGDGWII DGEKFVVLNG EAADTLVVTA RTSGGQRDRN
GIGVFLVPAN AKGVSRKGYP TQDGQRAADI TFTGVEIGAD AAIGDPANGL PLIEQVVDDA
RSALCAEAVG AMDESLTTTV EYIKTRKQFG VPIGSFQVLQ HRAADMFVAA EQARSMAMFA
TMAADFDDAK ERASAIAAAK VQIGKSAKFV GQQSIQLHGG IGMTMEAKIG HYFKRLTMIE
SSFGDTDYHL ARVSESGGLI
|
|---|
| |