| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3535 |
|---|
| Symbol | |
|---|
| ID | 4024049 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3925190 |
|---|
| End bp | 3927085 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963739 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_570659 |
|---|
| Protein GI | 91978000 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.10202 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATTTGA CCCGACGACA TCTTCTGCAA GCCGGCGCAT GGGCGGCTGC CACCCCGGCC
CTCGGTCTCG GCTCCGGCCT GCTGGCGGCA GGCCCCGCCG CAGCGCAGGG CGCGGCGGGT
GGGCCGGCCT GGCGGCACGG CCTGTCGCTG TTCGGCGAGG TCAAGTACCC GCCCGATTTC
AGGCGGTTCG ATTACGTCAA CCCGGAAGCG CCCAAAGGCG GCGCGGCGCG CCAAATCTCG
CTCGGCACCT TCGACAATTT CAACATTGCG GTCGCCGGGG TGAAGGGCAA CATCGCGCCG
GCGGTCGGCT ACCTCTACGA GACGCTGATG ACCGCCTCGC AGGACGAGGT CGGCGTCGTC
TACGGACTGC TCGCCGAAAG CGCGACCCAC CCCGACGATT TTTCCTGGGT GGCGTATCGG
CTGCGCGCCG GCGCCCGCTG GCACGACGGC AAGCCGGTGA CCGCTGATGA CGTGATCTTT
TCGTTCGACT CGCTGAAGAA ATTCAGCCCG CGCTACGCGT CGTATTACCG CCACGTCCTC
AAGGCTGAGA AGACCGGCGA GCGCGACATC CGCTTCACCT TCGATGGGCC CGGCAATCGC
GAATTGCCGA CCATTGTCGG CGAGCTGATG ATCCTGCCGA AGCATTGGTG GGAAGGCGTC
GACAGCGCCG GACGGACGCG CGACATTTCC GCCACCACGC TGGAAAAGCC GCTCGGCTCC
GGCCCGTACC GGATCAAGGA GTTCGTCGCC GGCCGCGCGA TCGTGCTGGA GCGCGTCAAG
GACTATTGGG GTGAGAAGCT GCCGGTGCGC ATCGGCGAGA ACAATTTCGA CGAGCTGCGC
TTCGAATTCT TTCGCGACAA CACCGTCGCG CTCGAAGCCT TCAAGGCCGA CCAGGCCGAC
TGGATCGCCG AGAACTCCGC CAAGCAATGG GCGACGGCCT ACGACTTCCC CGCGGTCACC
GACAAGCGGG TGGTCAAGGA GGAATTCCCG ATCAACGATT CCGGCCGGAT GCAGGGCTTC
GTCCTCAACC TCCGTCGCGA CATGTTCAAG GATGCCCGGA TCCGGCGCGC CTTCAACTAC
GCGTTCGACT TCGAGGAAAT GAACAAGCAG CTGTTCTACA GCCAGTACAA GCGGATCAAC
AGCTACTTCG AAGGCACCGA GCTCGCCTCC AGCGGGTTGC CGCAGGGCGA CGAACTCGCG
ATCCTCGAGA CCGTGCGCGA CAAGGTGCCG GCCGAGCTGT TCACCACCCC CTACAGCAAT
CCGGTCGGCG GCAATCCGGA ATCGGTTCGC GCCAATCTGC GCGAGGCGAT GAAGCTGGTG
AAGGAAGCCG GCTTCGACAT CAAGGATCGC AAGCTGGTCG ACCCGTCCGG CAAGCCGGTC
ACGGTCGAGA TGCTGGTGCA GGATCCGTCG GCCGAGCGCA TCACGCTGTT CTACAAGCCG
TCGCTGGAGC GGCTCGGCGT CACCGTCTCG ATCCGCGTCG TCGACGATGC TCAGTATCAG
AACCGCATCC GCGCCTTCGA TTTCGACATC ATCACCGATC TGTGGGGCCA GTCGCTGTCG
CCCGGCAACG AGCAGCGCGA TTATTGGGGT TCACAGGCTG CCGATCAGCC CGGCTCGCGC
AACACCATCG GCATCAAGAA CCCGGCGATC GACGCGCTGA TCGACAAGGT GATCTTCGCC
AAGGACCGCG CGACGCTGGT CGCCGCCACC CGCGCGCTCG ACCGCGTGCT GCTGTGGAAT
TTCTACGTCG TGCCGCAATT CACCTACGGC TTCATCCGCT ACGCCCGCTG GGACCGCTTC
AGCCACGCCG ATCTGCCTAA ATACGCGCGC TCCGGCCTGC CGATGCTGTG GTGGTACGAC
GCCGAGAAGG CCGCCAAGAT CGGCAGACGT TCTTGA
|
|---|
| Protein sequence | MNLTRRHLLQ AGAWAAATPA LGLGSGLLAA GPAAAQGAAG GPAWRHGLSL FGEVKYPPDF
RRFDYVNPEA PKGGAARQIS LGTFDNFNIA VAGVKGNIAP AVGYLYETLM TASQDEVGVV
YGLLAESATH PDDFSWVAYR LRAGARWHDG KPVTADDVIF SFDSLKKFSP RYASYYRHVL
KAEKTGERDI RFTFDGPGNR ELPTIVGELM ILPKHWWEGV DSAGRTRDIS ATTLEKPLGS
GPYRIKEFVA GRAIVLERVK DYWGEKLPVR IGENNFDELR FEFFRDNTVA LEAFKADQAD
WIAENSAKQW ATAYDFPAVT DKRVVKEEFP INDSGRMQGF VLNLRRDMFK DARIRRAFNY
AFDFEEMNKQ LFYSQYKRIN SYFEGTELAS SGLPQGDELA ILETVRDKVP AELFTTPYSN
PVGGNPESVR ANLREAMKLV KEAGFDIKDR KLVDPSGKPV TVEMLVQDPS AERITLFYKP
SLERLGVTVS IRVVDDAQYQ NRIRAFDFDI ITDLWGQSLS PGNEQRDYWG SQAADQPGSR
NTIGIKNPAI DALIDKVIFA KDRATLVAAT RALDRVLLWN FYVVPQFTYG FIRYARWDRF
SHADLPKYAR SGLPMLWWYD AEKAAKIGRR S
|
|---|
| |