| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3534 |
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| Symbol | |
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| ID | 4024048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3923295 |
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| End bp | 3925175 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963738 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_570658 |
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| Protein GI | 91977999 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.173833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCAGC TCAACCGCCG CAATGTGCTC GGCCTCGGAA TCGGCGCGCT GGCCGCGGCG
CATCTTCGCC CCGCGGCTGC GGCCGAGGGA GAGACGGTCG CCCACGGCAT GTCCGCCTTC
GGCGACCTGA AGTACCGGGC CGATTTTCCG CATTTCGACT ACGTCAATCC TCGGGCGCCG
AAGGGCGGGC TGTTCTCGAC CATTCCGTCG GTGCGCGCCT TCAACCAGTC GTTTCACACG
TTCAATTCGC TCAATGCCTA CGTCCTGAAG GGCGATGGCG CTCAGGGCAT GGGCCTCACT
TTCGCGACGC TGATGGCGCG GGCCGGCGAC GAGCCCGACG CGATGTACGG CCTCGCGGCG
TCGTCGGTGG CGATCTCTCG CGACGGTCTG ACCTATCGCT TCACCATGCG CCCGGAGGCG
CGCTTCCACG ACGGCAGCAA GCTCACCGCG CGAGACGCCG CGTTCTCGCT GAACATCCTG
AAGGCCAAGG GCCATCCGCT GATCACCCAG CAGATGCGCG ACTTCATCAA GGCGGAAGCG
ACCGACGACG CCACGCTGGT CGTGACGTTC GCGCCGAAGC GCGGCCGCGA CGTACCGCTG
TTCACGGCCT CCCTGCCGCT GTTCTCCGAG GCCTACTACG CGAAACGGCC GTTCGACGAA
TCGACCATGG AGGTGCCGCT CGGCAGCGGC CCCTACAAGG TGGGCCATTT CGAATCCGGC
CGCTCCATCA CCTTCGATCG CGTCAAGGAC TGGTGGGGCG CGAAGCTGCC GGTCAATGTC
GGGTCGAACA ATTTCGACAC CGTCCGGTTC GAGTTCTATC GCGATCGCGA CGTCGCTTTC
GAGGGCTTCT CCGGCCGCAA TTATCTGTAT CGCGAGGAGT TCACCTCGCG GATCTGGAGT
ACGCGCTACG ATTTCCCCGC GGTCCATGAC GGCCGGGTCA AGCGCGAGCA GCTTCCTGAC
GGGACCCCGT CCGGCTCGCA GGGCTGGTTC ATCAACACGC GGCGCGACAA GTTCAAGGAC
CCGCGGGTGC GCGAGGCGAT CGGCTGCGCG TTCGATTTCG AATGGACCAA CAAGACCATC
ATGTACGGCG CCTATCAACG CACGGTGTCG CCGTTCCAGA ATTCCGATCT GATGGCGGTG
GGGCCGCCGT CGCCCGACGA ACTGGCGCTG CTCGCACCGT ACCGCGGCAA GGTGCAGGAC
GAGGTGTTCG GCGCGCCGTT TCTGCCGCCG GCGTCCGATG GCTCGGGACA GGACCGCGCG
CTGCTGCGCA GAGGCGGTCA GCTTCTGACC GAGGCCGGCT TCGCGATCAA GGATCGCCAG
CGGCTGACGC CGCAGGGCGA GCCGATGCGG ATCGAGTTTC TGCTCGACGA GCCGTCGTTC
CAGCCGCACC ACATGCCGTT CATCAAGAAC CTCGGCACCC TGGGGATCGA GGCGACGTTG
CGGCTGGTCG ACCCGGTGCA GTTTCGCGCC CGACGTGACG ATTTTGATTT CGATATGGCG
ATCGAGCGCT TCGGCTTCTC GACCGTGCCG GGCGATGCGC TGCGCAGTTT CTTCTCGTCG
CAATCGGCCG CGACCAAGGG CTCGAACAAT CTCGCCGGCA TCGCCGATCC CGCGATCGAT
GCGATGATGG ATCAGGTGAT CGCTGCCGAC ACCCGGGCGA AGCTGGTTGT CGCCGCGCGG
GCGCTCGACC GGCTGATCCG CGCCGGCCGC TATTGGGTGC CGCAATGGTA CTCCGCCTCG
CACCGGCTGG CCTATTGGGA CGTGTTCGGC CATCCGCCGA ACCTGCCGAA ATATATCGGC
GTCGGCGCGC CGGATCTGTG GTGGTCGGAG CCGAAAGCCG CGGCCGCCGC CGACGGCGAC
GTCAAAGGCG AGGGAAAATA G
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| Protein sequence | MVQLNRRNVL GLGIGALAAA HLRPAAAAEG ETVAHGMSAF GDLKYRADFP HFDYVNPRAP
KGGLFSTIPS VRAFNQSFHT FNSLNAYVLK GDGAQGMGLT FATLMARAGD EPDAMYGLAA
SSVAISRDGL TYRFTMRPEA RFHDGSKLTA RDAAFSLNIL KAKGHPLITQ QMRDFIKAEA
TDDATLVVTF APKRGRDVPL FTASLPLFSE AYYAKRPFDE STMEVPLGSG PYKVGHFESG
RSITFDRVKD WWGAKLPVNV GSNNFDTVRF EFYRDRDVAF EGFSGRNYLY REEFTSRIWS
TRYDFPAVHD GRVKREQLPD GTPSGSQGWF INTRRDKFKD PRVREAIGCA FDFEWTNKTI
MYGAYQRTVS PFQNSDLMAV GPPSPDELAL LAPYRGKVQD EVFGAPFLPP ASDGSGQDRA
LLRRGGQLLT EAGFAIKDRQ RLTPQGEPMR IEFLLDEPSF QPHHMPFIKN LGTLGIEATL
RLVDPVQFRA RRDDFDFDMA IERFGFSTVP GDALRSFFSS QSAATKGSNN LAGIADPAID
AMMDQVIAAD TRAKLVVAAR ALDRLIRAGR YWVPQWYSAS HRLAYWDVFG HPPNLPKYIG
VGAPDLWWSE PKAAAAADGD VKGEGK
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