| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3520 |
|---|
| Symbol | |
|---|
| ID | 4024034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3907853 |
|---|
| End bp | 3909295 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963724 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_570644 |
|---|
| Protein GI | 91977985 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.637726 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACG GCGCCAATCA CCGATTCATC CGGACTCTGA AGGGCACGGC GATGGCGTTG
TCCGCCGTCG TCGCGCTGAC GCTGTTTCCG ACCTTGGCGC CGGTGCAGGC CAGCGACTAT
CGCGACACGC CGGCTCGGAT GGGCAACTCC GGCCTCAATG CGCGGCCGCT CGCGCTCGGC
ATCGGCAAGT CGGTCGTGAT CGATCTGCCG CGCGACATCA AGGATGTGCT CGTCGCCGAT
CCGAAGATCG CCAACGCGGT GGTGCGTTCG GCGCAGCGCG CCTACATCAT CGGCGCCGCC
GTCGGCCAGA CCAACATCGT GTTCTTCGAC TCCACCGGCC AGCAGATCGC CGCCTACGAC
ATCGCGGTGA CCCGCGACCT CAACGGCATC CGCACCGCGC TGCGGCAGTC GATCCCCAAT
GCGGACATCC AGGTCGAGGG CCTCGGCGAC GGCGTGATGC TGATAGGGTC GGTGGCGACA
CCGATCGAGG CGCAGCAGGC CGCCGATCTC GCCGCGCGGC TGGCAGGTGA CGCGAGCAAA
GTCGTTAACA ACATCGCGGT CCGCGGCCGC GACCAGGTGA TGCTGAAGAT CACCGTGGCC
GAGGTGCAGC GCGACATCGT CAAGCAGCTC GGCGTCGATC TCACCGCCAG CATGAACTAC
GGCACCTCCG TGGTGAAGTT CAGCAACACC AATCCGTTCA CCCAGTCCGG TGGGCCGCTG
GTGGCGAACA ACGCGCTGAC GACATCGTTC GGCTCGGGGC CGTCAGTGTC AGCGACGCTG
CGCGCGATGG AGAGCGCCGG GGTCGTGCGG ACGCTGGCCG AACCGAACCT CACGGCGATC
TCCGGCGAAC CGGCGAGCTT CCTCGCCGGC GGCGAGTTTC CCGTTCCAAG CGGCGTAACC
TGCACCAACA GCCTTTGCAC GCCGTCGGTG ACGTTCAAGA AGTTCGGTGT TCTGCTCAAC
TTTACCCCGG TGGTTTTGAC CGAGGGCCGG ATCAGCCTGA AGGTCTCGAC CGAAGTCTCC
GAGGTCTCGA GCGACAACTC GATCGTCATC GGCGGCCTGT CGGTGCCCTC GATCAAGACC
CGCCGTATCG AAAGCACGGT GGAAATCCCG TCCGGCGGTT CGCTGGCGAT GGCAGGTTTG
ATCCAGGAAC AGACCAAGCA GGCGATCAAC GGCCTGCCCG GCATGACCCA ACTCCCGATC
CTCGGCACCC TGTTCCGCAG CCGCGACTAC ATCAACCGGC AGACCGAACT GATGGTGATG
GTGACGCCCT ATGTGGTGCG TGCTGTGGCG CAGAAGGATC TGTCGCGGCC CGACGACGGC
TTCGCCGACG CCTCCGATCC ACAGTCGGAT CTGCTCGGCA ATATCAACCG GATCTACGGC
GTCCCCGGAC GCACCGGGCC CGCACAAACC TACCGGGGCC GGTTCGGCTT TATCACCGAC
TGA
|
|---|
| Protein sequence | MSYGANHRFI RTLKGTAMAL SAVVALTLFP TLAPVQASDY RDTPARMGNS GLNARPLALG
IGKSVVIDLP RDIKDVLVAD PKIANAVVRS AQRAYIIGAA VGQTNIVFFD STGQQIAAYD
IAVTRDLNGI RTALRQSIPN ADIQVEGLGD GVMLIGSVAT PIEAQQAADL AARLAGDASK
VVNNIAVRGR DQVMLKITVA EVQRDIVKQL GVDLTASMNY GTSVVKFSNT NPFTQSGGPL
VANNALTTSF GSGPSVSATL RAMESAGVVR TLAEPNLTAI SGEPASFLAG GEFPVPSGVT
CTNSLCTPSV TFKKFGVLLN FTPVVLTEGR ISLKVSTEVS EVSSDNSIVI GGLSVPSIKT
RRIESTVEIP SGGSLAMAGL IQEQTKQAIN GLPGMTQLPI LGTLFRSRDY INRQTELMVM
VTPYVVRAVA QKDLSRPDDG FADASDPQSD LLGNINRIYG VPGRTGPAQT YRGRFGFITD
|
|---|
| |