| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3509 |
|---|
| Symbol | |
|---|
| ID | 4024023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3897676 |
|---|
| End bp | 3899304 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637963713 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_570633 |
|---|
| Protein GI | 91977974 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.29113 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCTGA TCCGTTTGCT GCGCGCCTTG CTGTCGCGCC TGTTGTTCGT CGCCGTGGTA
CTCGCTGTCG TCCATCTCGC GCCCCAGCCG GCGCTGGCCG GTCCCTATGA GGACGCCGTG
GCGCAGTTTT CCGCGGGCTC GTTCTCCGAC ACCGAGGAGG CGATCGGCAG GTTGGTCGCG
AGCGGCAATC CGCGCGCCGC CACCATCATC GTCGCATTGC AGGACGGCCG GCTGTTCGCC
GACACCGACG CCAGGACCGT GTTCATCAAG GCCAGGGACG GCGCGATCAG CAATGCGGTG
ACCGGCGAAA CCGTCGCCGC GTTGCCGGCG AGGGCCGAGG CGGTCCGCCT CAACAACAAG
CTGCGCCGCG CCGTGTCGGG CGCGATGGCG GGCTTGACGC TGCTGTCGCC GGACCTGAAC
AAGCGCATCC AGGCGGCGCA GTCGGTGTTC AAGACCCACG ACGAGACCAT GCTGGCGACG
GTCGAGGCCG CGCTGAAGGC GGAGAAAAAC GCCGCCGCCA GACAGGCCTT CGCCGAGGCG
CGCGCGTCGA TCCTGCTGTT CAAGCAGGAC GCCTCCGACG TCGACAAGCT CGACGCCATC
GCCACCCTCA AGGCCCGCGG CGATCAGGAG GCGATGGCGC TCCTGATCGG CGTGCCGGGC
GAGCAGAGCG CGGCGGTGGC GAGCGGCATC GCAAGTGCCA AAGCGGCAAT CGAGCGCAAT
CTGTCGCTGT GGTCGATGGT GCAGAACGCT TGGTACGGGC TGTCGCTCGG CTCGGTGCTG
CTGCTGGCCG CGATCGGGCT CGCCATCACC TTCGGCGTGA TGGGGGTCAT CAATATGGCG
CATGGCGAGA TGGTGATGCT CGGCGCCTAC ACCACCTTCG TGGTGCAGGA GGTGATCCGC
ACCAGCTATC CGGCGCTGTT CGACTATTCG CTGCTGATCG CGGTGCCGCT GGCCTTCCTC
GTTGCGGGGG CGATCGGCGT GCTGATCGAG CGCAGCGTGA TCCGCTTCCT CTACGGCCGG
CCGCTGGAAA CGCTGCTGGC GACCTGGGGG CTGTCGCTGA TCCTGCAGCA GGCGGTGCGC
ACGCTGTTCG GCCCGACCAA TCGCGAAGTC GGCAATCCCT CCTGGATGAG CGGCGCGTTC
GAACTCGGCC AGATCACCAT CACCTACAAT CGGCTGTGGA TCCTGTGCTT CACACTGGCG
GTGTTCGCGA TCCTGCTGGC GATGCTGCGC TACACCGCCC TCGGCCTCGA GATGCGCGCG
GTGACGCAGA ACCGCCGGAT GGCGGCGTCG ATGGGCATCG CCACCTCGCG GGTCGACGCG
CTGACCTTCG GGCTCGGAAG CGGCATCGCC GGCATCGCCG GCGTGGCGCT GTCACAGATC
GACAACGTTT CTCCGAACCT CGGCCAGAGT TACATCATCG ACTCTTTCAT GGTCGTGGTG
TTCGGCGGCG TCGGCAATCT GTGGGGCACG CTGGTCGGCG CGTTCTCGCT CGGCATCGCC
AACAAGTTCC TGGAGCCGGT GGCCGGCGCG GTGCTGGCCA AGATCGCGAT CCTGGTGCTG
ATCATCCTGT TCATCCAGAA GCGCCCGCGC GGCCTGTTCG CGCTGAAGGG CCGGGCGGTG
GAAGCATGA
|
|---|
| Protein sequence | MPLIRLLRAL LSRLLFVAVV LAVVHLAPQP ALAGPYEDAV AQFSAGSFSD TEEAIGRLVA
SGNPRAATII VALQDGRLFA DTDARTVFIK ARDGAISNAV TGETVAALPA RAEAVRLNNK
LRRAVSGAMA GLTLLSPDLN KRIQAAQSVF KTHDETMLAT VEAALKAEKN AAARQAFAEA
RASILLFKQD ASDVDKLDAI ATLKARGDQE AMALLIGVPG EQSAAVASGI ASAKAAIERN
LSLWSMVQNA WYGLSLGSVL LLAAIGLAIT FGVMGVINMA HGEMVMLGAY TTFVVQEVIR
TSYPALFDYS LLIAVPLAFL VAGAIGVLIE RSVIRFLYGR PLETLLATWG LSLILQQAVR
TLFGPTNREV GNPSWMSGAF ELGQITITYN RLWILCFTLA VFAILLAMLR YTALGLEMRA
VTQNRRMAAS MGIATSRVDA LTFGLGSGIA GIAGVALSQI DNVSPNLGQS YIIDSFMVVV
FGGVGNLWGT LVGAFSLGIA NKFLEPVAGA VLAKIAILVL IILFIQKRPR GLFALKGRAV
EA
|
|---|
| |