| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3506 |
|---|
| Symbol | |
|---|
| ID | 4024020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3894471 |
|---|
| End bp | 3895166 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963710 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_570630 |
|---|
| Protein GI | 91977971 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | [TIGR03410] urea ABC transporter, ATP-binding protein UrtE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0951975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGACCG TCGACAACAT CAGCCTGTAC TACGGCGCGG CGCAGGCGTT GCGCGGGGTT
TCGATTGCCG CGGAGCCCGG CAAGGTCACT TGCGTGCTCG GCCGCAACGG AGTCGGCAAG
ACCAGCCTGC TGCGCGCGAT GGTCGGCCAG CAGCCGATCG CGTCCGGGTC GATCCAATTC
GACGGCGCCG ACATCTCGCA TCTGAAGCCC TATGAGCGGG CGCGGCGCGG CATCTCGCTG
GTGCCGCAGG GCCGCGAGAT TTTTCCGCTG CTCACGGTCG AGGAGAATCT CAAGACCGGC
TACGCGCCGC TGAAGCGCGC CGACAAATCG ATCCCCGACG ATGTGTTCTC GCTGTTTCCG
GTGCTCAACT CGATGCTGCG CCGGCGCGGC GGCGATCTGA GCGGCGGCCA GCAACAGCAA
TTGGCGATCG GCCGCGCGCT GGTGATGCGG CCGAAGCTGC TGCTGCTCGA CGAGCCGACC
GAAGGCATTC AGCCGTCGAT CATCAAGGAC ATCGGCCGGG CGATTTCCTA TTTGCGCAGC
CTCGGCGACA TCGCCATTGT GCTGGTCGAG CAGTATCTCG ATTTCGCTTG CGAGCTCGGC
GACAGTTTTG CGGTGATGGA TCGCGGCGCG GTGAAGTTCA GCTGCGATCG GGCGACGCTT
GACCCCGCGG AGATCAGCCG GCAGATGGCG CTCTGA
|
|---|
| Protein sequence | MLTVDNISLY YGAAQALRGV SIAAEPGKVT CVLGRNGVGK TSLLRAMVGQ QPIASGSIQF
DGADISHLKP YERARRGISL VPQGREIFPL LTVEENLKTG YAPLKRADKS IPDDVFSLFP
VLNSMLRRRG GDLSGGQQQQ LAIGRALVMR PKLLLLDEPT EGIQPSIIKD IGRAISYLRS
LGDIAIVLVE QYLDFACELG DSFAVMDRGA VKFSCDRATL DPAEISRQMA L
|
|---|
| |