| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3490 |
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| Symbol | ligD |
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| ID | 4024004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3880200 |
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| End bp | 3882992 |
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| Gene Length | 2793 bp |
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| Protein Length | 930 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963694 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_570614 |
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| Protein GI | 91977955 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.505494 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGCAG GCAAGACTCT CACGCTGTAT CGCAACAAGC GCGACTTCGA GCAGACCGCC
GAGCCGCGCG GCGATGGCAA GGTCGCGCCG TCGAAGCGGC GGCGTTTCGT GATCCAGAAG
CACGACGCCA CGCGGCTGCA CTACGACCTG CGGCTGGAAT ATAACGGCGT GTTCAAGTCC
TGGGCGGTGA CGCGCGGGCC GTCGCTCGAT CCGCACGACA AGCGGCTCGC GGTCGAGGTC
GAGGACCATC CGCTCGACTA CGGCGACTTC GAAGGCACGA TTCCCAAGGG CCAATATGGC
GGCGGCACCG TGCAGCTCTG GGATCGCGGC TATTGGGAGT GCGACGATCC GGAGCGCGGT
TTCAAGAAGG GCGACCTCAA ATTCTCGCTG GACGGCGAGA AGTTGCAGGG AAGCTGGGTG
CTGGTGCGGA TGCGCCATGA TCGCAACGGC GGCAAGCGAA CCAACTGGTT GCTGATCAAG
CATCGCGACG ACGACGCCCG CGAGGGAAAG GCCAACGATA TTCTCGACCA GGACCGCTCG
GTGGCGTCCG GCCGCGCGAT GACAGAGATC GCACAGGGGA AAGGCCGCGC GCCAAAACCG
TTCATGACCG GCAAGGCGGC GCGCGTGAAG GCCGACGCGG TATGGAATTC GAAGGAGGGG
CTGGCCGCAG ACGAGCGTGC GGCCAATGGC GCGGGCGGGG CGGTCGCGTC GAAGCCGGCG
CCGCCGAACA AGGCGAAGGC GACCACCGCA AAGTCCAAGA CGGCAAAGTC CAAGACGGCC
AAGGTCGCGA AGCCGAAGCC GGGGCGCAAG GCTGCGGCGA AGCGCGCGGC GATGCCGGAT
TTCGTTCCGC CGCAGCTCTG CACCTCGGTC GAGCGGCCGC CCGGCGGCGA TGGCTGGGGT
CACGAGATCA AATTCGACGG CTACCGGATG CAGCTACGCG TCGACGCCGG CGAGGCGACG
CTGAAGACCC GCAAGGGATT GGACTGGACC GCCAGATTTC AGGCGATCGC CGACCAGGCG
GCGGGCCTGC CCGATGCGCT GATCGACACC GAGATCGTCG CGCTCGATCA GCACGGCCAC
CCGGATTTCG CGGCGCTGCA GGCGGCGTTG TCGGACGGCG ACACGGACAA TCTGATCTGC
TTTGCGTTCG ACCTGCTCCA TGCCGATGGC GAGGATCTGC GTGCGTTGCC GCTGTCCGAC
CGCAAGCGGC GGCTGCAGGA GTTGCTCACG GCCGCGCGCG GCCGGCGCAA GCAGGGCCTG
ATCCGCTATG TCGAGCATTT CGACACCGGC GGCGACGCGA TCCTGCAATC CGCCTGCAAG
CTGTCGCTCG AAGGCATCGT CTCGAAGAAG CTCGATGCGC CCTATCGATC CGGCCGCAGC
GACAACTGGA CCAAGGCGAA GTGCCGGGCC GGGCACGAGG TGGTGATCGG CGGCTGGAAG
ACCAATGCGG GCAAATTTCG TTCGCTGCTG GTCGGCGTGC ATCACGACGA TCATCTTGCT
TATGTCGGCA TCGTCGGCAC CGGCTTCGGG CAGGATGTGG TGAAGCGACT GCTGCCGGAA
TTGAAAGCCC ACGCCGCCAA GGACAATCCA TTTGCCGGCG AGAACGCGCC GCGCAAGACC
GCCGATGTGC ATTGGCTGGC GCCGGAGCTT GTGGCCGAGA TCGAGTTCGC CGGCTTCACC
GGCGCCGGCA TGGTGCGGCA GGCCGCATTC AAGGGGCTGC GCGCGGACAA GCCGGCCGGG
GAGGTCGAAG CGGAGGAGCC TGCGAAGGTC GATATCGCCG GGCCGAAGCC CGGACGCCGC
GCCAAGCCCT CATCCAACGC CAAGTCGGCC AAGCCAAAGA CCGCAACGCC GAACGCGGGA
CGCAGCAAGA CCCGCGCGAC CCATGCCAGT CGCGCCGAGG TGATGGGCGT GGTGATCTCC
AAGCCGGACA AGGAGCTGTG GCCCGCGAGC CGGATCGGCG ATGCGGTCAA CAAGCGCGAT
CTCGCGCACT ACTACGAAGC GGTCGGCGAT TGGATGATCC CGCATCTCGA GGGGCGGCCG
TGTTCGATCG TCCGCGCGCC CGACGGGATC GGCGGCGAAC ACTTCTTCCA GCGACACGCA
ATGCCGGGGA TGTCGAACCT GATCGCGCTT GCGAAAGTGG CGGGCGACCG CAAGCCTTAC
GTGCAGATCG ACCGGGTCGA AGGATTGATC GCTGCGGCGC AGATCGGCGG CCTTGAACTG
CATCCGTGGA ATTGTGCGCC GGGTCGGTAC GAGGTCCCCG GGCGGCTGGT GTTCGATCTC
GATCCGGCGC CCGAAGTCGG GTTCGACGCG GTGATCGTGG CGGCGCGTGA AATGAAGGAC
CGGCTCGAGG CGATCGGCCT GCCGAGCTTC TGCAAGACCA CCGGCGGCAA GGGGCTGCAC
GTGGTGACGC CGCTGGTCCC CAGCGACGAT ATCGACTGGA AGCAGGCCAA AATCTTCGCG
CAGACGGTGT GCGCCGGGAT GGCCGACGAC AGCCCCGATC GCTATCTGCT CAACATGTCG
AAGCAGCAGA GGAAGGGAAA GATCTTCCTG GACTATCTGC GCAACGACCG GATGTCGACC
GCGGTCGCTG TGCTGTCGCC TCGCGCACGC GAGGGCGCGA CGGTGTCGAT GCCGTTGACG
TGGACGCAGG TGAAAGCCGG GCTCGATCCC AAGCGATACA CGGTCGAGAC AGTTCCAGCG
CTGCTGGCAA AGACCAAAGC CTGGGCGGAC TACGACAAAG CCGCGGCCCC GCTGAAAGCG
GCGATCAAGA AGCTCGCGTT CAGCAGGGCT TGA
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| Protein sequence | MVAGKTLTLY RNKRDFEQTA EPRGDGKVAP SKRRRFVIQK HDATRLHYDL RLEYNGVFKS
WAVTRGPSLD PHDKRLAVEV EDHPLDYGDF EGTIPKGQYG GGTVQLWDRG YWECDDPERG
FKKGDLKFSL DGEKLQGSWV LVRMRHDRNG GKRTNWLLIK HRDDDAREGK ANDILDQDRS
VASGRAMTEI AQGKGRAPKP FMTGKAARVK ADAVWNSKEG LAADERAANG AGGAVASKPA
PPNKAKATTA KSKTAKSKTA KVAKPKPGRK AAAKRAAMPD FVPPQLCTSV ERPPGGDGWG
HEIKFDGYRM QLRVDAGEAT LKTRKGLDWT ARFQAIADQA AGLPDALIDT EIVALDQHGH
PDFAALQAAL SDGDTDNLIC FAFDLLHADG EDLRALPLSD RKRRLQELLT AARGRRKQGL
IRYVEHFDTG GDAILQSACK LSLEGIVSKK LDAPYRSGRS DNWTKAKCRA GHEVVIGGWK
TNAGKFRSLL VGVHHDDHLA YVGIVGTGFG QDVVKRLLPE LKAHAAKDNP FAGENAPRKT
ADVHWLAPEL VAEIEFAGFT GAGMVRQAAF KGLRADKPAG EVEAEEPAKV DIAGPKPGRR
AKPSSNAKSA KPKTATPNAG RSKTRATHAS RAEVMGVVIS KPDKELWPAS RIGDAVNKRD
LAHYYEAVGD WMIPHLEGRP CSIVRAPDGI GGEHFFQRHA MPGMSNLIAL AKVAGDRKPY
VQIDRVEGLI AAAQIGGLEL HPWNCAPGRY EVPGRLVFDL DPAPEVGFDA VIVAAREMKD
RLEAIGLPSF CKTTGGKGLH VVTPLVPSDD IDWKQAKIFA QTVCAGMADD SPDRYLLNMS
KQQRKGKIFL DYLRNDRMST AVAVLSPRAR EGATVSMPLT WTQVKAGLDP KRYTVETVPA
LLAKTKAWAD YDKAAAPLKA AIKKLAFSRA
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