| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3483 |
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| Symbol | |
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| ID | 4023997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3867244 |
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| End bp | 3870546 |
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| Gene Length | 3303 bp |
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| Protein Length | 1100 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637963687 |
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| Product | trehalose synthase-like |
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| Protein accession | YP_570607 |
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| Protein GI | 91977948 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases
[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis |
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| TIGRFAM ID | [TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTGA TGTCAACGAT CGACGCGACC AATTCCAAGC CCGAGCTCGA GGCGACCGAC
GAGCTGTGGT ACAAAGACGC GATCATCTAC CAGCTCCACG TCAAGGCGTT CGCCGACAGC
AACAATGACG GCATCGGCGA TTTCGCCGGC CTGACGGAGA AGCTGGACTA TCTGCAGGAC
CTCGGCGTCA CCGCGCTGTG GCTGCTGCCG TTCTATCCCT CGCCGCAGCG CGACGACGGC
TACGACATCG GCGATTACGG CTCGATCAAT CCCGACTTCG GCACGATGAA GGATTTCCGC
CGCTTCATCG TCGAGGCGAA GAAGCGCAAT CTGCGCGTCA TCACCGAGCT GGTCATCAAC
CACACGTCCG ACCAGCACGA CTGGTTCAAG CGCGCCCGGC GCAGCGAAAA GGGCTCGAGC
GCACGCAACT GGTATGTCTG GAGCGACACC GACCAGAAAT ATCAGGGCAC CCGGATCATC
TTCACCGACA CCGAGAAGTC GAACTGGACC TGGGATCCCG AGGCCGGCCA ATATTATTGG
CACCGCTTCT TTTCGCATCA GCCCGACCTG AATTTCGACA ATCCGCATGT CGTCAGCGCC
CTCGTCAAGG TGATGAAGCG CTGGCTCGAC ACCGGCGTCG ACGGCTTCCG GCTCGACGCA
ATTCCCTATC TGTGCGAGCG CGACGGCACC AACAACGAGA ACCTTCCCGA GACCCACGCC
GTCATCAAGC AGTTGCGCGC CGAGCTCGAT GCTTACGCCA AGGGCAAGGT GCTGCTGGCG
GAGGCCAATC AATGGCCGGA GGACGTCCAG GAATATTTCG GCCATAGCGA CGAATGTCAC
ATGGCCTATC ACTTCCCGCT GATGCCGCGG ATCTACATGG CGATCGCCCA GGAAGATCGC
TTTCCGATCA CCGACATCAT GCGGCAGACA CCGGAAATCC CCGCCAACTG TCAATGGGCG
ATGTTCCTGC GCAATCACGA CGAGCTGACG CTGGAAATGG TCACCGACGT CGAGCGCGAT
TATCTGTGGA AGACCTATGC GGCCGATCCG CGCGCTCGCA TCAATGTCGG CATCCGCCGC
CGCCTCGCGC CGCTGATGGA CAATGACCGC CGCAAGATCG AGCTGATGAA CTCGCTGCTG
CTGTCGTTCC CCGGCACGCC GATCATCTAT TACGGCGACG AAATCGGCAT GGGCGACAAC
ATCTATCTCG GCGACCGCAA CGGCGTCCGC ACGCCGATGC AATGGTCGTC GGATCGCAAT
GGCGGCTTCT CACGCGCCGA CCCGGCGCGA CTCTATGCCC CGACCATCAT GGACCCGGTC
TACGGCTACG CGTCGGTCAA TGTCGAGGCG CAGGCGCGCA GCCTCTCGTC GCTGCTCAGC
GCGACCAAGC GGCTGATTTC GGTCCGCAAA TCCACCTTCG CCTTCGGCCG CGGCACGATG
ACGTTCATCC GGCCCGCGAA CCGCTCGGTG CTCGCTTATG TCCGGCAGTA CGAAGACGAG
GTGATCCTCT GCGTCGCCAA TCTGTCGCGT TCGGCGCAGG CCACCGAACT CGATCTGTCG
CCGTGGAAGG ACCGCGTGCC GCAGGAAATG CTCGGACGCA CGCGTTTTCC GGCGATCGGC
GAACTGCCTT ACATGATCAC GCTGGCGCCC TACGGCTTCT ACTGGTTCAA GCTGGAGGAG
CGCGACACAT CCCAGCACGT CGCGCCCGCA GCCGCCGTGC CCGAGTTCGA AACCCTGGTG
GTGCCTGTCG GCGCAACATG GATGTCGCTC GCCCGCACCC GCGGCGTGTT CGAGCGCGAT
GTGCTGCCGG CGCATCTGTC GCGCACCCGG TGGTTTCCAG AGCGTTCGCC GCGTTCGATC
CATCCGCGAG TCACCTCGGC CATTCCATTC TCGAACACCC ATGAGAACCG CCCGTGGCTG
GCGTTCTTCG AGGCGACCGT GCGCGGCGTC GATGCCCGCT ATGTGCTGCC GATGCAGATC
GACTGGGTGC GGTTCGATCG CGAGCGCTAC AATCCGCACG CCTTCGCCGC CGTGCGTCAG
GGCGCACGCG AGGGCACGCT GCTCGATGTC GCCACCGACG TCGAATTCGT CACCCTGCTC
CTCGACAATC TGCGCGAGTC GGTCGTGGTG GAGAATGAGG GCGTCCGACT GCAATTCCGC
CCCGGCTCGC GTCTGGCCGA GAAGCCCGCC GTCGCGTATC ACGATATCCG CGCGGTCGAG
ACCGAGCAGT CGAATTCCAC GGCGCTGGTC GGCGAACACT ACGTCATCAA GCTGTATCGC
CGGCTGCAAA GCGGCATCAA TCCGGAAATC GAAATGGGCC GCTTCCTCAC CGAGGTCGCG
GGCTATACCA ACACCCCGTC TCTGCTCGGC AGCGTCGAAC TGGTCGAGGG CGACAAGGTC
AGCGCGATCG CGGTGGTGCA TGATTTCGTC GCCAACCAGG GCGACGGCTG GATCGTGACA
TCGGGTTATC TCGACCGCTA TGTCGACGAC CAGCGGCTGC TGATCAATTC CGAAGAACAG
CACGTCAGCG AGGAGCTGGC GCCGTACCGG CACTACATGC AGCAGACCGG CAAACGCGTC
GCCGAAATGC ACATCGCGCT GTCAAGCCAT CCGGAGCAGC CCGACTTTGC TCCCGCGCCG
ATCAGCAGCG ACGACGCCGA GCGCTGGACC GGTATCGTCA CCGAGAACGC CAAGCGGGTG
CTCGACGAGT TGCAGCACAA GCGCGAGAGC CTGAAAGACG CCGAACGGGC CATAGTGGAC
GAGCTGCTGG CGCAACGCGA CGGGATTTTC GAGCGGCTGC GCGGACTGTT CGGCAGCGAC
GGCGGCCTGA ACATCCGCCA TCATGGCGAC TTCCATCTCG GCCAGATGCT GATCGTCAAG
GACGACGTCT TCATCATCGA TTTCGAAGGC GAGCCGCGGC GGTCGCAGGC CGAGCGCCGC
GCCAAGGCAC CCGCCGCGCG CGACGTCGCG GGGCTGGTGC GCTCGATCGA CTATTCCACC
ACCGCAGCGC TGGAGCGCGC GCTGAAAGTC TCGACCGACG AAACCGGCAA GATCGCCGCG
GCACTCGATG GCTGGCGGAT TCGGTCGACC GAAGCGTTCC TCACCGCCTA CCGCGAAACG
ATGGGCGACA GCCTGGTCTG GCCCGCCGAT CGCGCCGCAG CCGATCGGTT ACTGGACTTT
TTCCTGATCG AGAAGGCATT GTATGAGATC GAATACGAAC TCGCCCACCG TCCCGACTGG
CTCCGCGTGC CGCTGGCTGG CATCCTTCGT ATCCTGACCC GGCAGCCCGA GGAGATTTCA
TGA
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| Protein sequence | MNLMSTIDAT NSKPELEATD ELWYKDAIIY QLHVKAFADS NNDGIGDFAG LTEKLDYLQD
LGVTALWLLP FYPSPQRDDG YDIGDYGSIN PDFGTMKDFR RFIVEAKKRN LRVITELVIN
HTSDQHDWFK RARRSEKGSS ARNWYVWSDT DQKYQGTRII FTDTEKSNWT WDPEAGQYYW
HRFFSHQPDL NFDNPHVVSA LVKVMKRWLD TGVDGFRLDA IPYLCERDGT NNENLPETHA
VIKQLRAELD AYAKGKVLLA EANQWPEDVQ EYFGHSDECH MAYHFPLMPR IYMAIAQEDR
FPITDIMRQT PEIPANCQWA MFLRNHDELT LEMVTDVERD YLWKTYAADP RARINVGIRR
RLAPLMDNDR RKIELMNSLL LSFPGTPIIY YGDEIGMGDN IYLGDRNGVR TPMQWSSDRN
GGFSRADPAR LYAPTIMDPV YGYASVNVEA QARSLSSLLS ATKRLISVRK STFAFGRGTM
TFIRPANRSV LAYVRQYEDE VILCVANLSR SAQATELDLS PWKDRVPQEM LGRTRFPAIG
ELPYMITLAP YGFYWFKLEE RDTSQHVAPA AAVPEFETLV VPVGATWMSL ARTRGVFERD
VLPAHLSRTR WFPERSPRSI HPRVTSAIPF SNTHENRPWL AFFEATVRGV DARYVLPMQI
DWVRFDRERY NPHAFAAVRQ GAREGTLLDV ATDVEFVTLL LDNLRESVVV ENEGVRLQFR
PGSRLAEKPA VAYHDIRAVE TEQSNSTALV GEHYVIKLYR RLQSGINPEI EMGRFLTEVA
GYTNTPSLLG SVELVEGDKV SAIAVVHDFV ANQGDGWIVT SGYLDRYVDD QRLLINSEEQ
HVSEELAPYR HYMQQTGKRV AEMHIALSSH PEQPDFAPAP ISSDDAERWT GIVTENAKRV
LDELQHKRES LKDAERAIVD ELLAQRDGIF ERLRGLFGSD GGLNIRHHGD FHLGQMLIVK
DDVFIIDFEG EPRRSQAERR AKAPAARDVA GLVRSIDYST TAALERALKV STDETGKIAA
ALDGWRIRST EAFLTAYRET MGDSLVWPAD RAAADRLLDF FLIEKALYEI EYELAHRPDW
LRVPLAGILR ILTRQPEEIS
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