| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3482 |
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| Symbol | |
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| ID | 4023996 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3865277 |
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| End bp | 3867232 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637963686 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_570606 |
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| Protein GI | 91977947 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACAGAT CGACCCAAGT GTTCCAGACC GTCGCGGCAG GCGGTGCTTT CCACATTGAA
GATATCTTCC CGATCATCGA TAGCGGCCGT TTCCCCGTTA AAAGGGTCGT CGGCGAGCCG
ATCGAGGTCT GGGCGGATAT CTATCGCGAC GGCCATGAGG TGATCGCAGC GGCGCTGATC
TGGCGGCGCG AGCAGGATCA GGACTGGCAG CGCGCGCCGC TGCGGCATGT CGTCAACGAC
CGCTGGACGG CCACCTTCAC GCCCGACCAG ATTGGACGAT ATGTCTATGC GATCGAGGCC
TGGACCGACG AATTCGCGAC TTGGCGACAT GGGGTCGAGC TGAAGCTGAA GGCCGGCCAG
GACGTCACGC TCGACGCGCT GGAAGGCGCA GGCCTGCTGA CCAAGGCGCA GCACGGCGGA
GCGGAGGCGC TCGCGATCGT CCACCGCCAA TGCGACGAAT ATCTGCAGAC CGGCGAGGTC
GGCCCCCTGC TCGCGCCCGA GCTGCGCGAC GCGATGGGCG AAAGCCAGGC GCGGCTTGAT
GTCACGCGGT CGGCTCTGCT GCCGCTGATG ATCGACCGCG AGCGCGCCCG CAACGGCGCC
TGGTACGAGA TGGTGCCGCG CAGCCAGAGC ACCGTCCCCG GCCAGCACGG CACCTTCCGC
GATTGCATCG CCCGGCTGCC GGACATCGCC GCGATGGGCT TCGACGTGCT GTATTTCACG
CCGATCCATC CGATCGGGCG CGTCAACCGC AAGGGGCGCA ACAATTCGCT CAAGGCCGAG
GCCGGCGACC CCGGCAGCCC CTATGCGATC GGCGCGGAGG AAGGCGGCCA CGACGCGGTG
CATCCCGAGC TCGGCACGCT CGACGACTTC CACGCCTTGC TGAAGGCGTG CAAGCTGGTC
AATCTCGAGA TCGCGCTCGA CATCGCCGTG CAATGCTCGC CGGATCATCC CTGGCTGAAG
CAGCATCCGG ACTGGTTCAA GCGCCGGCCC GACGGCTCGA TGAAATACGC CGAGAACCCG
CCGAAGAAAT ACGAGGACAT CGTCAATCCG GACTTCACCT GCGAGGACGC CGGCTCGCTG
TGGAATGCGC TGCGCGACGT CATCCTGTTC TGGGTCGACC AGGGCGTGAA GATCTTCCGG
GTCGACAATC CGCACACCAA ACCGCTGCGG TTCTGGGAAT GGATGATCCG CGAGGTGCAG
CTCCGCCATC CCGACGTGCT GTTCCTGGCA GAAGCCTTCA CCCGGCCGAA GCTGATGAAG
GGCCTGGCCA AGCTCGGCTT CAGCCAGTCC TACACCTATT TCACCTGGCG GACCCAGAAA
TGGGAAATCG AGGAATACCT GCGCGAGCTG ACCGGATATC CGGAGCGTGA CTTCTATCGG
CCGAACTTCT TCGTCAACAC CCCGGACATC CTGCCTTTCC ATTTGCAGGG CGGCGAACCG
TGGATGTTCA GGTCGCGCGT CGCGCTCGCC GCAACGCTGT CATCGACCTA TGGCATCTAT
AGCGGCTTCG AACTGCTCGA ACACGAGCCG ATTCCCGGCA AGGAGGAGTA TCTCGATTCC
GAAAAATACG AGATCAGGGT GCGTGACTGG GACAAGCCCG GCAACATCAA GCCCTATATC
CGCGCGATCA ACAGCGCCCG CCGCGCCAAT CCGGCGCTTC AGCAGACCAG CAATCTGCGC
TTCGTCGACA TTCAAGACGC AAACGTGACC GGCTTCATCA AACAATCGCC CGATTTGAGC
AACGTCGTAG CTGTCGCCAT CGCCTTGTCG CGCGACTTCC ACGAATTCTG GTTTCCGCTC
GGCGATGTTC AGGTCGAGAT CGGCGGCGAG CGCCGTCCGG TCGCGGCCGT CGAGAACCTG
CTCACCGGCG AACGGCACGC CGTCGAATGG GGTGGACTTA ACCTGCGGAT CGACCCGCAA
CGCGATCCGG CGCTGCTTTT CCGCTGCCTG GCGTGA
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| Protein sequence | MNRSTQVFQT VAAGGAFHIE DIFPIIDSGR FPVKRVVGEP IEVWADIYRD GHEVIAAALI
WRREQDQDWQ RAPLRHVVND RWTATFTPDQ IGRYVYAIEA WTDEFATWRH GVELKLKAGQ
DVTLDALEGA GLLTKAQHGG AEALAIVHRQ CDEYLQTGEV GPLLAPELRD AMGESQARLD
VTRSALLPLM IDRERARNGA WYEMVPRSQS TVPGQHGTFR DCIARLPDIA AMGFDVLYFT
PIHPIGRVNR KGRNNSLKAE AGDPGSPYAI GAEEGGHDAV HPELGTLDDF HALLKACKLV
NLEIALDIAV QCSPDHPWLK QHPDWFKRRP DGSMKYAENP PKKYEDIVNP DFTCEDAGSL
WNALRDVILF WVDQGVKIFR VDNPHTKPLR FWEWMIREVQ LRHPDVLFLA EAFTRPKLMK
GLAKLGFSQS YTYFTWRTQK WEIEEYLREL TGYPERDFYR PNFFVNTPDI LPFHLQGGEP
WMFRSRVALA ATLSSTYGIY SGFELLEHEP IPGKEEYLDS EKYEIRVRDW DKPGNIKPYI
RAINSARRAN PALQQTSNLR FVDIQDANVT GFIKQSPDLS NVVAVAIALS RDFHEFWFPL
GDVQVEIGGE RRPVAAVENL LTGERHAVEW GGLNLRIDPQ RDPALLFRCL A
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