| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3480 |
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| Symbol | |
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| ID | 4023994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3861320 |
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| End bp | 3863125 |
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| Gene Length | 1806 bp |
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| Protein Length | 601 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637963684 |
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| Product | glycoside hydrolase 15-related |
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| Protein accession | YP_570604 |
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| Protein GI | 91977945 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.340753 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCGGGTA AGATCGAAGA CTACGCACTG ATCGGCGACT GCGAGACATC GGCTTTGGTC
GGACGCGACG GCTCGATCGA TTGGCTGTGC TGGCCGTCGT TCGACTCCGA AGCCTGCTTC
GCCGCACTTC TGGGCGACGA AAACCACGGC CACTGGCAGA TCTGCCCGTC CGCAGCGATC
CTCGCGACGA CCCGGTGCTA TCGCGGCGAC AGCCTGATCC TCGAGACCCG GTTCGAGACC
GAAACCGGCG CGGTCACGCT GATCGACTTC ATGCCGCTGC GCGGCAAGGC CTCCGACCTC
GTGCGGCTGG TGCGCGGCGA TTCCGGCCGT GTCGAGATGC GGATGCATCT CGTGCTGCGG
TTCGGCTTCG GCGTCGACAT TCCCTGGGTC AAGCGCGGGC AGACGCCCGG CGAATTGCTG
GCGATCTGCG GGCCGGACAT GACGGTGCTG CGCTCGCCGG TCGAGACCCA TGGCGAGGGC
ATGACCACGG TCGCAGAGTT TTCAGTGAGC GCGGGCGAGA CGATCCCGTT CGTGATGACC
TACGGCCCGT CGCATCTGCC GGTGCCGGCG GCGATCGATC CGGTCGCCGC GCTGTGCGAC
ACCGAGCGGT TCTGGACCGA CTGGTCCGGC CGCTGCACCT ATGACGGCGC CTATCGCGCT
TTGGTGATGC GCTCGCTGAT CACCCTGAAA GCGCTGACCT TCGCGCCGAG CGGCGGCATC
GTCGCGGCGC CGACCACGTC GCTGCCGGAA AAACTCGGTG GCTCCCGCAA TTGGGACTAT
CGCTTCTGCT GGCTGCGCGA TGCGACCTTC ACGCTGTTCG CGCTGATGAA CAACGGCTAC
TCGGCGGAAG CCTCCGACTG GCACGACTGG CTGCTGCGCG CCGCGGCCGG CGCGCCGGCC
AAATTGCAGA TCATGTATTC GATCTATGGT CATCGGCGGC TGCTGGAGTG GCAGGCCGAC
TGGCTGCCGG GCTACGAGGG CGCGCAGCCG GTGCGGATCG GCAACGCCGC GCACGCGCAG
ATGCAGCTCG ATGTCTATGG TGAGCTGATC GACGCCTTCC ATCAGTGGCG GGTGGCGGGC
GTCGAGCTCG ACGGCGAGTC CTGGGCGATG GAATGCGCCG TCCTCGAACA TCTGGCGACG
ATCTGGGATC AGCCGGACAG CGGCATCTGG GAGCGCCGCG GACCCGGCAA GCACTACGTC
TTTTCCAAGG TGATGAGTTG GGTCGCGTTC GATCGCGGCA TCAAGAGCGC CGAGACGTTC
GGCCTGAAGG CGCCGCTCGC GAAATGGCGG GCGCTGCGCG ACGCGATTCA TCGCGACGTC
TGCGCCAACG GCTTCGACGC CCGGCAGAAT GCGTTCGTCG AGCATTATGG CGCCGACGTG
TTGGACGCCA GCGCGCTGCT GATTCCGGCG GTCGGTTTCC TGCCGTCCGA CGATCCGCGG
GTCCGCGGCA CGCTCGAAGC GGTCGAGACG CATCTGATGC ATCAGGGCTT CGTGCTCCGC
CACGACCCGC GCGAAACCCC CGATGAGCCG CTGCCGACCG AGGGCGCGTT CCTCGCCTGC
AGCCTATGGC TGGCCGATGC GCATGTGTTG GCCGGGGACA TCGACAAGGC GAAGGCGCTG
TTCGATCGCG TCGTCGGCAT CGCCAATGAC GTCGGCCTTC TCGCCGAGGA ATACGACCCC
GAGGCGCGGC GGCAGACCGG CAACTTCCCG CAGGCGCTGA CCCATATCGC ACTGATCAAC
ACCGCCAACA ATCTCGGCGC GGCGCAGGCC CCGGCCGAAA AGCCGGCGAT GCAGCGCTCG
AAATAG
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| Protein sequence | MPGKIEDYAL IGDCETSALV GRDGSIDWLC WPSFDSEACF AALLGDENHG HWQICPSAAI
LATTRCYRGD SLILETRFET ETGAVTLIDF MPLRGKASDL VRLVRGDSGR VEMRMHLVLR
FGFGVDIPWV KRGQTPGELL AICGPDMTVL RSPVETHGEG MTTVAEFSVS AGETIPFVMT
YGPSHLPVPA AIDPVAALCD TERFWTDWSG RCTYDGAYRA LVMRSLITLK ALTFAPSGGI
VAAPTTSLPE KLGGSRNWDY RFCWLRDATF TLFALMNNGY SAEASDWHDW LLRAAAGAPA
KLQIMYSIYG HRRLLEWQAD WLPGYEGAQP VRIGNAAHAQ MQLDVYGELI DAFHQWRVAG
VELDGESWAM ECAVLEHLAT IWDQPDSGIW ERRGPGKHYV FSKVMSWVAF DRGIKSAETF
GLKAPLAKWR ALRDAIHRDV CANGFDARQN AFVEHYGADV LDASALLIPA VGFLPSDDPR
VRGTLEAVET HLMHQGFVLR HDPRETPDEP LPTEGAFLAC SLWLADAHVL AGDIDKAKAL
FDRVVGIAND VGLLAEEYDP EARRQTGNFP QALTHIALIN TANNLGAAQA PAEKPAMQRS
K
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