| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3479 |
|---|
| Symbol | |
|---|
| ID | 4023993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3860389 |
|---|
| End bp | 3861201 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637963683 |
|---|
| Product | Cof protein |
|---|
| Protein accession | YP_570603 |
|---|
| Protein GI | 91977944 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0561] Predicted hydrolases of the HAD superfamily |
|---|
| TIGRFAM ID | [TIGR00099] Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.446194 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGCA TCGCACTGGT GGTTTCCGAC GTCGACGGCA CGTTGGTGAC GTCCGACAAA
CGGCTGACCG ACAGGTCCCG CGCCGCGGTG GCGAAGCTCG AACAGGCCGG CGTCGGCTTC
ACCCTGACGT CGAGCCGCCC GCCGGTCGGG ATGCGGATGT TCAGCGATCC GCTCGGCATC
ACGCTGCCGC TCGGGCCGTT CAACGGCAGC TCGATCGTCG CGCCGTCGCT CGAGGTGATC
GAGCAGCATC TGATCCCCGC CGCCGCGGTG GAGACCAGCC TCGCATTGCT CGATCGCCAC
GGCATCGATG GCTGGATCTT CACCAACGAC AATTGGTACA TCCGCCGCGA CGACGGCAGA
TACGTGCCGC ACGAGAAGCT CGCCATCCGG TTCGATCCGA CGCAATTCGA CGACTTCGCG
CCGCTGACCG ACAAGGCCTG CAAGATCGTC GGCGCCAGCG CCGATTTCGC GCTGCTCGAA
CGCTGCGAAA CGGAATTGCA GACGATGCTC GGTGACAGCG CGCTGGCGAT CCGCTCGCAG
GACTACTACC TCGACGTCAC ACCGCCGGGC CGGAACAAGG GCACCTTCGT GCAGGCGATG
GCGAAGCGGC TCGGCATTCC GTGCGCGGCG ATCGCCACGC TGGGCGACAT GCAGAACGAT
CTCGCGATGT TCCGGGTCAG CGGACTGCCG ATCGCGATGG GCAACGCCAC CGACGACGTC
AAGCGGCTCG CCGCCCACGT CACCGCTTCG AACGACGACG ACGGCTTCGC CGCCGCGATC
GACTTCATCC TCGCGCACAA CGACAAAGGC TGA
|
|---|
| Protein sequence | MDRIALVVSD VDGTLVTSDK RLTDRSRAAV AKLEQAGVGF TLTSSRPPVG MRMFSDPLGI
TLPLGPFNGS SIVAPSLEVI EQHLIPAAAV ETSLALLDRH GIDGWIFTND NWYIRRDDGR
YVPHEKLAIR FDPTQFDDFA PLTDKACKIV GASADFALLE RCETELQTML GDSALAIRSQ
DYYLDVTPPG RNKGTFVQAM AKRLGIPCAA IATLGDMQND LAMFRVSGLP IAMGNATDDV
KRLAAHVTAS NDDDGFAAAI DFILAHNDKG
|
|---|
| |