| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3460 |
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| Symbol | |
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| ID | 4023974 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3840700 |
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| End bp | 3842634 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637963664 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_570584 |
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| Protein GI | 91977925 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2202] FOG: PAS/PAC domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0284505 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCCA AAACACCCTC CGCACCGAGC CTGATTGGAC GCCTGTCCAC GCCGTCGCTG
ATCGTCACGA TGTTCCTGCT GGGTATGAGC GCCTGCGTGC TCGGATTGGT GGTCTGGAAG
GCGTATGACG CGCGCCGCAT CGCATTGGTG CAGAGCGAAA CGGAAATCCG AAACCTCGTG
CGATCCCTGA CGGAGCACGC GTCGCATACG ATTCAGTCCG TCGATGTCGT CGTCGACGAT
CTCGTGGCGC TGTTGCGGTT TCGCGGCACG CCGACCACCG TTTTCAACGA TCGGCTGCGT
GAGATCGTCG ACAATCTCCC ACACCTGAGA CGATTGGCGG TTCTGGACGA ACGGGGCGAT
TTGCGGTTCG CCTCGATAGC GCAAGTCCCG CACATCAACT ATGCCGATCG CAGCTACTTC
AATCACCACC GCGACAATCC GCATCGCGAG CTGTTGATCA CCGGCCCGCT CCTGCCCCGA
ACCTCCAGCC AGCCAGTGAT TGCTCTGACG CGGCGCATCG AGACGCCCGA GGGGCAATTC
GCCGGCGTCG TGGTCGCGAC GATCGAGAGC GACTATTTTC TCGAATTTTA CAAGATGTTC
AAACTCGGCA CCAATGGCAG CATCAATCTG ATCAATGGCG ACGGCAACGT GCTGATCCGG
TGGCCGGCGC TGTCGACCCA GGTGCGGGAC CTGTCCAGGG GTAATCTGTT TCAGAAACGG
CTCAAGGACA GCCCGACCGG ATATCATCGC ATCGTTTCGC CGTTCGATGG CCTCGTCAAA
TACTACGCTT ACGAGAAGAG TGGCCGCTAC CCGTTGATCG TCACGGTGTC GCGCAGCGAG
GCTTCGGTTC TGTCCGGCTG GTACGAGGAG CTACGTTCCG ATATCCTGGT CGCGATCGCG
CTGCTCGCCT GCATCGTGCT GCTGGCGACC CTGCTCGGCA GCCAGTTGCG CTATCGCCAA
CGCGTCGAAA ACATCCTGCG CGAGCGTGAG GCGCGCTTCC GCCTGATCGA CGCCAACATC
GCCGACGTCG TGCTGCTTCT CGACAACAAG GGCGTGCTGG TCTTCGTGTC GCAATCCAGC
AAAGCCGTGC TCGGCTTCAC GCCCGAGCAA CTGATCGGCC AGTCCTGCTT CGATCTGGTG
CATCCCGACG ACGCAAGCTC TCTGCGTTTG CACAATCTCC AACTTGACCA ACCATCAGGG
AGCGAACGTC GCGAGTTCCG TCTGGTGCGC CCCGACGGCA CGATGATCTG GCTCGAGGCG
AATTTCAGGT TTACCAAAAG CGAGCGGACC CGGCGGTGCG ACATCGTCTG CACGCTGCGC
GACGTCACCC AGCGCAAGCG GATGGAGGAC GAAGTCGAGG CGCTCAATTT CCGTCTGGCA
GAAATGGCCA AAACCGATGG TCTCACAGGG CTACCCAATC GCCGTTCGCT CGACGACTTC
ATCAACAACG TTTTCGCCAC CCATGCAGAT CTCGCGGTGC TGATGATCGA CATCGACTAT
TTCAAGGGGC TCAACGACTG CCTCGGCCAT CAGGCGGGCG ACGAAGGACT TCGGCAGATC
GGCAAGCTGC TGGGCGACGT CGTCGCCAAC ACCGGCGGCC TCGCAGCTCG CTACGGCGGC
GAGGAGTTCG CCGTTATCCT GCCTGGATCC GACGCCAAAG CCGCGATGGC GCTGGCGGAG
ACCGCGCGGA TCAAGATCCG CGACTTGGCC CTCGCCAATC CCGCCGCGCC GAACCAACGC
CTCACCGTGA GCATCGGAGT CGCCAGCCGG ACCTCAGCAA CCCCCGACGC GAGCACACTG
TTTCGCGAAG CCGACATTGC GCTCTACGAA GCCAAGCGCC GCAGTCGCGA CTGCAGCGTG
GCGGCGCCTG TCTATCTCGG CGATGCCGGG TCGCTGGTCC CGGAGGTTGA GGCCAGGAGC
GGCACACCGG CCTGA
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| Protein sequence | MTAKTPSAPS LIGRLSTPSL IVTMFLLGMS ACVLGLVVWK AYDARRIALV QSETEIRNLV
RSLTEHASHT IQSVDVVVDD LVALLRFRGT PTTVFNDRLR EIVDNLPHLR RLAVLDERGD
LRFASIAQVP HINYADRSYF NHHRDNPHRE LLITGPLLPR TSSQPVIALT RRIETPEGQF
AGVVVATIES DYFLEFYKMF KLGTNGSINL INGDGNVLIR WPALSTQVRD LSRGNLFQKR
LKDSPTGYHR IVSPFDGLVK YYAYEKSGRY PLIVTVSRSE ASVLSGWYEE LRSDILVAIA
LLACIVLLAT LLGSQLRYRQ RVENILRERE ARFRLIDANI ADVVLLLDNK GVLVFVSQSS
KAVLGFTPEQ LIGQSCFDLV HPDDASSLRL HNLQLDQPSG SERREFRLVR PDGTMIWLEA
NFRFTKSERT RRCDIVCTLR DVTQRKRMED EVEALNFRLA EMAKTDGLTG LPNRRSLDDF
INNVFATHAD LAVLMIDIDY FKGLNDCLGH QAGDEGLRQI GKLLGDVVAN TGGLAARYGG
EEFAVILPGS DAKAAMALAE TARIKIRDLA LANPAAPNQR LTVSIGVASR TSATPDASTL
FREADIALYE AKRRSRDCSV AAPVYLGDAG SLVPEVEARS GTPA
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