| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3449 |
|---|
| Symbol | |
|---|
| ID | 4023963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3829927 |
|---|
| End bp | 3831255 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637963653 |
|---|
| Product | lytic murein transglycosylase |
|---|
| Protein accession | YP_570573 |
|---|
| Protein GI | 91977914 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
|---|
| TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.139295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGGTC TCATCATTGA GGCGGCGTTC ACAGATGCCG GCTCAGGTGC TAGCTTGCGG
AAAATGCTTC TGACGCCTTG GCCGGTGATG GTCCGTCAAC TGCACATCGT CATCCTCGCA
TTGGTCTTAT GCGTGGCGCC CGGCTGGTGG TCGGGCGTGG CGGCCGCGGC CGATCCTGGC
TTCAGCAGAT TTCTTGCCGA ACTGTGGCCG CAGGCCCGGG AGGCCGGCAT TTCGCGCGCC
ACATTCGACG CGGTCACGGC TGGCCTCGAG CCGGACTACA AGCTGCCCGA TCTGATCCTG
CCGGGGCGGC CTAAAACCGG TGCGCCGGCT CAGGCCGAGT TCGTCCAGGT GCCGGCCGAC
TATCTCAAGG AAGCGAGCAT CGCGCGTCTC GCCGCGGCCG GCCAGAAGCT CTTCCAGCAA
TATCAGCCGA CGCTGCGCGG CATCGAGCAG CGCTTCGGCG TTCCGGCGAC GGTGGTGCTG
GCGATCTGGG GGCGCGAGAC CGACTACGGT CGCTACCGGC TGCCCTATGA TGCGGTCCGC
GTGATGGCGA CGCAGGCCTA TGTCGGCCGC CGCAAGGATC AGTATCGCAC CGAATTCATC
ATGGCGATGA AGATCATCGA CGAAGGCGCG GTGACCCGAC AGGGGATGCG ATCGTCATGG
GCCGGCGCGA CCGGACTGAC GCAGTTTCTG CCGTCGGAGT ATTACAAACA CGGCGTCGAT
TTCGACGGCG ACGGCAAGGT CGACATCTGG AATTCGGTGC CGGATGCACT CGCCTCGGCC
GCGCAGCAGC TCGTCAACAA GGGCTGGAAG CCAAGCGTGC GCTGGGCCTA TGAGGTGCGC
GCGCCTGGCA ACGCCGATTG CACGCGCGGC GTGCCGGAGC TCAGCCAACC GATCGGGCAA
TGGCTGCGCG AAGGCTTCAC GCTGGCGCGC AACGACAAGC TCAGCGCCAG CGAACTGGCC
GAGCCGGCGT CGCTGCTGCA GCCGGAAGGC ATCTACGGCC CGGCGTTCCT GACCACGAAG
AACTACTTCG TTATCAAGGA ATACAATTTC TCCGATCTCT ACGTGCTGTT CGTCGGACAT
CTCGCCGACC GGATGACCAA CCCGCAGCCG TTCGCGACGC CATGGGCGGC GACAAAGCAG
CTCCGCACCG CCGATGTCGA GGCAATGCAG CGCGGGCTGA CGCGGCTCGG CCTCTACAAC
GACAAGATCG ACGGCAAGGC CGGCATGATG ACCCGGTCGG CTTTGGGCGC CTATCAAAAA
TCAGCTCGGC TGAAGCTCGA TTGCTGGCCG AGCGAAGCCG TGTTGCGCTC GATCGAAGCG
GCGCGCTGA
|
|---|
| Protein sequence | MAGLIIEAAF TDAGSGASLR KMLLTPWPVM VRQLHIVILA LVLCVAPGWW SGVAAAADPG
FSRFLAELWP QAREAGISRA TFDAVTAGLE PDYKLPDLIL PGRPKTGAPA QAEFVQVPAD
YLKEASIARL AAAGQKLFQQ YQPTLRGIEQ RFGVPATVVL AIWGRETDYG RYRLPYDAVR
VMATQAYVGR RKDQYRTEFI MAMKIIDEGA VTRQGMRSSW AGATGLTQFL PSEYYKHGVD
FDGDGKVDIW NSVPDALASA AQQLVNKGWK PSVRWAYEVR APGNADCTRG VPELSQPIGQ
WLREGFTLAR NDKLSASELA EPASLLQPEG IYGPAFLTTK NYFVIKEYNF SDLYVLFVGH
LADRMTNPQP FATPWAATKQ LRTADVEAMQ RGLTRLGLYN DKIDGKAGMM TRSALGAYQK
SARLKLDCWP SEAVLRSIEA AR
|
|---|
| |