Gene RPD_3431 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3431 
Symbol 
ID4023945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3814600 
End bp3815208 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content68% 
IMG OID637963636 
Productthiamine-phosphate pyrophosphorylase 
Protein accessionYP_570556 
Protein GI91977897 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0352] Thiamine monophosphate synthase 
TIGRFAM ID[TIGR00693] thiamine-phosphate pyrophosphorylase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTATC CTGATCGCTT CTATCCCGTC GTCGACAGCA TCGCGTGGGT GAAACGCCTC 
GCCGCGCTCG GCGTCGGCAC CGTGCAGCTC CGCGCCAAGG ACCTCGACGA CGGCGCAGCC
TTGCAGCTCG TCACCGACGC GCTCGAGGCG CTGCAGGGCA CCGACACTAA GCTCGTCGTC
AACGACTATT GGCGCGCGGC GATCGTCGCC GGCGCGCAGC ATCTGCATCT CGGTCAGGAA
GACCTCGCCG AGGCCGACCT TCACGAAATC CGCAGCGCCG GGCTGACGCT CGGCCTCTCC
ACGCATGACG ACGCCGAACT CGAAACCGCG CTGGCCGCAA GGCCCGACTA CATCGCGCTC
GGCCCGATCT TCCCGACCAC GCTGAAGTCG ATGCGCTTCG CGCCGCAGGG CATTCCGAAG
ATCACCGAAT GGAAGAAGCG CGCAGGCCGC ATCCCGCTGG TGGCGATCGG CGGCATCAAG
CTCGAACAGG CCGAGGAGAT CTTCGCCGCC GGCGCGGATT CGATCGCGGT GGTCAGCGAC
GTGACGCAGA ACCCCGACCC GGATGCGCGG GTGCGCGCCT GGCTCGACGC CGTCGCGGAG
ACAGCGTGA
 
Protein sequence
MPYPDRFYPV VDSIAWVKRL AALGVGTVQL RAKDLDDGAA LQLVTDALEA LQGTDTKLVV 
NDYWRAAIVA GAQHLHLGQE DLAEADLHEI RSAGLTLGLS THDDAELETA LAARPDYIAL
GPIFPTTLKS MRFAPQGIPK ITEWKKRAGR IPLVAIGGIK LEQAEEIFAA GADSIAVVSD
VTQNPDPDAR VRAWLDAVAE TA