| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3408 |
|---|
| Symbol | |
|---|
| ID | 4023921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3790299 |
|---|
| End bp | 3791546 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637963613 |
|---|
| Product | extensin-like |
|---|
| Protein accession | YP_570533 |
|---|
| Protein GI | 91977874 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0393857 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTGTG CGCGCATGAC GCGCGGAGTT CGTTTGTATC TCGTCGGCTC CTTCGTCCTT
GTGTCGCTTG CTGGTTGCGG ACGCGGACTG TTTCAGTCCG CCGAGCGTGA ACCGTGGCGG
ACCGAGGCCG AGGTCGCTTG TCTGAAATCG GGTGTTATCA AAGAGACCCC GGAACTGGTC
CGGATCGATC CGATTTCGGG CCCGGGCGTT TGCGGCGCCG AATTCCCCTT GAAAGTGGCC
GCGCTCGGCG AAGGCGGTGC GATCGGCTTT GCCGACGATT TGCGCCCGCC GGCTGCGATC
GGCGGCCGCG CCGGCCAGCC GAACTGGCCG GGCGCGCAGC CATCCTATGC CGCGCCGGCG
CGCAGCACTC CCAATCAGCA GGCGCAACCG CCGGCCTATG GCGCATCCGC GCGCTCCGGC
TACGGCGCGC CGAACGATGG CTATCGCGGC GGCAACGGCC CGGTGTCGCT GACTGCGCCG
GGTGTGGCGC CGGCTGGCCA GGACATCGAT CTGCCGGACG AAGGCGGCAT GCCGGCCGAT
CGTCCGCCCG CGGAGAACGT CACCGGCTAT TCGCGCAATC CGAACGACGC GCGGGCGCCG
GCTGGCCGCT ATCCCGACGA TGCGCAGCGA CCGCTGCCGC GCCTCGGTCC GGCGCAGGGC
AATATCACCG GCTCGGTCGG TCCGGTCGCG ATCAAGCCGA CCGCGACACT GGCGTGTCCG
ATCGTCTCGG CGCTGGATCG CTGGCTCGCG GAATCCGTGC AGCCATCGGC GATGCGCTGG
TTCGGCGTGC GCGTCGCCGA GATCAAGCAG ATTTCCGCGT ATTCGTGCCG TGGCATGAAC
GGCAATCCGA ACGCGCATAT TTCCGAGCAC GCCTTCGGCA ACGCGCTCGA TATCTCGGCC
TTCGTGCTGG CCGACGGCCG CCGCGTCACG ATCAAGGGCG GCTGGAAGGG CTTGCCGGAG
GAGCAGGCGT TCTTGCGCGA CGTGCAGAAT TCGGCGTGCC AGGTGTTCAA CACGGTGTTG
GCCCCGGGCT CGAACATCTA TCACTACGAT CACATTCACG TCGATCTGAT GCGGCGGCGC
AGCGCGCGCA GCATCTGCAA GCCGGCGGCG GTGTCGGGCG AGGAGGTCGC GGCGCGGCTG
CAGCAGCGCA ACCCCTACGC CAGCAACTGG TCTGGCGTCA CCGGCTCAAT CGGCCGCAAC
GCGGCCCGGT CGAAAGCGGT GGACCGCGAG GAAGCTGAAG ACGATTAG
|
|---|
| Protein sequence | MDCARMTRGV RLYLVGSFVL VSLAGCGRGL FQSAEREPWR TEAEVACLKS GVIKETPELV
RIDPISGPGV CGAEFPLKVA ALGEGGAIGF ADDLRPPAAI GGRAGQPNWP GAQPSYAAPA
RSTPNQQAQP PAYGASARSG YGAPNDGYRG GNGPVSLTAP GVAPAGQDID LPDEGGMPAD
RPPAENVTGY SRNPNDARAP AGRYPDDAQR PLPRLGPAQG NITGSVGPVA IKPTATLACP
IVSALDRWLA ESVQPSAMRW FGVRVAEIKQ ISAYSCRGMN GNPNAHISEH AFGNALDISA
FVLADGRRVT IKGGWKGLPE EQAFLRDVQN SACQVFNTVL APGSNIYHYD HIHVDLMRRR
SARSICKPAA VSGEEVAARL QQRNPYASNW SGVTGSIGRN AARSKAVDRE EAEDD
|
|---|
| |