Gene RPD_3403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3403 
Symbol 
ID4023915 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3782937 
End bp3783803 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content67% 
IMG OID637963608 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_570528 
Protein GI91977869 
COG category[V] Defense mechanisms 
COG ID[COG3023] Negative regulator of beta-lactamase expression 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0566227 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTCAG GTTCGCTCGC GTCTGCGGGT CACGAGTCGA AACGTCGACG TGTCGTCCCA 
CTGCCCAAGG GCATCGTGGC CATGCAGACC TTCATGCCTG ACTCCTCGGT CGTGTCCGAC
GTGATTCCGT CGCCGAATTT CGGCGAGCGC AACAAGGCCC GCCGGCCCGA CATGATCGTC
CTGCACTATA CCGGGATGCC CGATGTCGAG GGCGCGCTGA CACGGTTGTG CAAGGCGGGC
ACCGAGGTGT CGGCGCATTA CGTCGTGCTC GAGGACGGCC GGATTCTGCA ATGCGTGCCG
GAATCCAAGC GCGCCTGGCA TGCCGGCGTC GCGAAATGGG CCGGCGAGGA CGACATCAAT
TCCTGCTCGA TCGGCATCGA GATCATCAAT CGTGGGCACG ATTGGGGCTA CCCTGACTAC
CCGCTCCGGC AGATCGCCGC GGTGATCACG CTGTGCCGCG GCATCATCAT CCGCCGCAAC
GTGCCGCCGC ATCGCGTGCT CGGCCATTCC GACGTCGCGC CGTCGCGCAA GAAGGACCCC
GGCGAGAAAT TTCCGTGGCG CTCGCTCGCC GCCTCCGGCG TCGGCCATTG GGTCGAGCCG
GCGCCGATCG AGGCCGGCGC GGGATTCCGG CTCGGCGCCG AGGGCGAGCA GATCCGGGTG
ATGCAGCAGG CGCTGGCCGA TTACGGCTAT GGCATTTCCG CCACCGGCAA GTACGACCCG
GCGACCGTCG AGGTCGTCTC CGCGTTCCAG CGTCACTTCC GACCGGAGAA GGTCGACGGT
GTCGCCGACG GCTCGACGCT CGCAACGTTG CACGCTTTGC TCGGCGAGCT GCCGATCGAC
GTCCGCGCCA CCGCTGCGCT GACCTGA
 
Protein sequence
MLSGSLASAG HESKRRRVVP LPKGIVAMQT FMPDSSVVSD VIPSPNFGER NKARRPDMIV 
LHYTGMPDVE GALTRLCKAG TEVSAHYVVL EDGRILQCVP ESKRAWHAGV AKWAGEDDIN
SCSIGIEIIN RGHDWGYPDY PLRQIAAVIT LCRGIIIRRN VPPHRVLGHS DVAPSRKKDP
GEKFPWRSLA ASGVGHWVEP APIEAGAGFR LGAEGEQIRV MQQALADYGY GISATGKYDP
ATVEVVSAFQ RHFRPEKVDG VADGSTLATL HALLGELPID VRATAALT