Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3403 |
Symbol | |
ID | 4023915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3782937 |
End bp | 3783803 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637963608 |
Product | N-acetylmuramoyl-L-alanine amidase |
Protein accession | YP_570528 |
Protein GI | 91977869 |
COG category | [V] Defense mechanisms |
COG ID | [COG3023] Negative regulator of beta-lactamase expression |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0566227 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGTCAG GTTCGCTCGC GTCTGCGGGT CACGAGTCGA AACGTCGACG TGTCGTCCCA CTGCCCAAGG GCATCGTGGC CATGCAGACC TTCATGCCTG ACTCCTCGGT CGTGTCCGAC GTGATTCCGT CGCCGAATTT CGGCGAGCGC AACAAGGCCC GCCGGCCCGA CATGATCGTC CTGCACTATA CCGGGATGCC CGATGTCGAG GGCGCGCTGA CACGGTTGTG CAAGGCGGGC ACCGAGGTGT CGGCGCATTA CGTCGTGCTC GAGGACGGCC GGATTCTGCA ATGCGTGCCG GAATCCAAGC GCGCCTGGCA TGCCGGCGTC GCGAAATGGG CCGGCGAGGA CGACATCAAT TCCTGCTCGA TCGGCATCGA GATCATCAAT CGTGGGCACG ATTGGGGCTA CCCTGACTAC CCGCTCCGGC AGATCGCCGC GGTGATCACG CTGTGCCGCG GCATCATCAT CCGCCGCAAC GTGCCGCCGC ATCGCGTGCT CGGCCATTCC GACGTCGCGC CGTCGCGCAA GAAGGACCCC GGCGAGAAAT TTCCGTGGCG CTCGCTCGCC GCCTCCGGCG TCGGCCATTG GGTCGAGCCG GCGCCGATCG AGGCCGGCGC GGGATTCCGG CTCGGCGCCG AGGGCGAGCA GATCCGGGTG ATGCAGCAGG CGCTGGCCGA TTACGGCTAT GGCATTTCCG CCACCGGCAA GTACGACCCG GCGACCGTCG AGGTCGTCTC CGCGTTCCAG CGTCACTTCC GACCGGAGAA GGTCGACGGT GTCGCCGACG GCTCGACGCT CGCAACGTTG CACGCTTTGC TCGGCGAGCT GCCGATCGAC GTCCGCGCCA CCGCTGCGCT GACCTGA
|
Protein sequence | MLSGSLASAG HESKRRRVVP LPKGIVAMQT FMPDSSVVSD VIPSPNFGER NKARRPDMIV LHYTGMPDVE GALTRLCKAG TEVSAHYVVL EDGRILQCVP ESKRAWHAGV AKWAGEDDIN SCSIGIEIIN RGHDWGYPDY PLRQIAAVIT LCRGIIIRRN VPPHRVLGHS DVAPSRKKDP GEKFPWRSLA ASGVGHWVEP APIEAGAGFR LGAEGEQIRV MQQALADYGY GISATGKYDP ATVEVVSAFQ RHFRPEKVDG VADGSTLATL HALLGELPID VRATAALT
|
| |