Gene RPD_3400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3400 
Symbol 
ID4023912 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3779307 
End bp3781061 
Gene Length1755 bp 
Protein Length584 aa 
Translation table11 
GC content65% 
IMG OID637963605 
Productpeptidoglycan glycosyltransferase 
Protein accessionYP_570525 
Protein GI91977866 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0768] Cell division protein FtsI/penicillin-binding protein 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.210929 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.991586 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCGATC CGTCGCTTCC ACTTGTCGGC CATCGCGTCG GTTGGCGCCA GCGGTTGATT 
CGCAGCCTGA TCTATGGGCG CGACGTCGAC CGCGACGCCA AGGCGCGCGC CCGCGTCGGC
CTCGCGATGC TGGCGTTCGC CGCGGTCTAC GGCGTGATCG CCTTCAAGCT GTCGATGATC
GCGCTGTTCG GCGACAGCCA CGGCACGCGA CGCACGGCGT CGCAGGATGC GATCGCCACC
GCCCGGCCGG ATATCGTCGA TCGCAACGGC ACCATCCTCG CCACCGACGT CAAGTCGCCC
TCCTTGTTCG GCGAGCCGCG CCGCATCATC GATCAGGACG AAGCGGTCGA ACTGCTCACC
GCGACGCTGC CCGACCTCGA GACCCAGGAA GTCCGCGAGC GGCTGGCGTC GAAAAAGGGC
TTCGTCTGGT TGAAGCGCGA GATCACGCCG CGACAGCAGG CCGATATCAA GAAGCTCGGC
ATCCCCGGCA TCGGCTTCCT GCGCGAGAAC AAGCGGGTCT ATCCGACCGG CACCGAGGTC
TCGCATCTGA TCGGCCTCGT CAACATCGAC AACCAGGGCA TCGCCGGCAT CGAGAAGTGG
CTCGACAACA ACGGCCTCGC CGATCTGCAT CGCGCCGGTT TCGCTTCCGA CAGGCTGCAG
CGTCCGGTCG AACTCGCGGT CGACATCCGC GTCGAACATG CGCTGCGCGA CGAACTGCTG
AAGGCGAAGA ACAAGTACAG CGCCAAGGCG GCGTCGGGCC TCGTCTCAAA CGTCAATACC
GGCGAGATCG TGGCGATGGT GTCGCTGCCG GATTTCGATC CGAACAATCC GCGCGAGGCC
AACGACCCCG ATCGCATCAA CCGGCTCACC ACCGGCGTGT ACGAGATGGG CTCGACCTTC
AAGACGCTGA CGCTGGCGAT GGCGCTGGAC TCGGGCAAGG CGACGCTGAA CACGCTGTAC
GACGCGCGCG GCGCGCTGCG CTACGGCAAG TTCGCGATCC ACGACACCCA TCCGCTCGGC
CGCCCGATCA CGCTCGCGGA AGTGTTCACC TTCTCGTCCA ATGTCGGCGC GGCGCGGATC
GCGATCGCCC AGGGCGTCGA GGCGCACAAG GCGTTCCTGA AGAAGGTCGG CCAACTCGAC
CGGCTGCGCA CGGAGCTGCC GGAAAGCGCG TCGCCGATCG TGCCGAAGCG CTGGGGCGAA
CTCAACACCA TCACCATTTC GTTCGGTCAC GGCGTTGCCG TCGCCCCGCT GCAGGCGGTG
ATGGGCATCA ACGCCATGGT CAATGGCGGC TACCTCATTC CGCCGACTTT CCTCAAGCGC
AGCGAGGAAG ACGCGCTGAA GATGGCCAAG CGCGTGGTCA AGAAGGAAAC CAGCGACAAG
ATCCGCTATC TGATGCGGCT CAACGCCGAA ATCGGCACCG CCAGGACCGC CGATCAGATC
GCCAAGGGCT ACTATATCGG CGGCAAGACC GGCACCTCGG AAAAGGTCAT CAACGGCCGT
TACGCCAAGA AGCAGGTGCT GAACTCGTTC ACCGCGGTGC TGCCGGCCGA CAATCCACAG
TTCCAGGTGC TTGTGATGCT CGACGAGCCC AAGGCGCTGC CGGAAACCCA CGGTTTCATC
ACCTCGGGCT GGAACGCGGT GCCCACCGGT GGCAAGGTGA TCGAACGAAT CGCGCCGCTG
TTGGGAATCG AGCCGCGGTT CGATCTGCCG CCGCCCGACC GCCTTATTCT TGCGGCATCG
AAGACGGCCC AATAG
 
Protein sequence
MIDPSLPLVG HRVGWRQRLI RSLIYGRDVD RDAKARARVG LAMLAFAAVY GVIAFKLSMI 
ALFGDSHGTR RTASQDAIAT ARPDIVDRNG TILATDVKSP SLFGEPRRII DQDEAVELLT
ATLPDLETQE VRERLASKKG FVWLKREITP RQQADIKKLG IPGIGFLREN KRVYPTGTEV
SHLIGLVNID NQGIAGIEKW LDNNGLADLH RAGFASDRLQ RPVELAVDIR VEHALRDELL
KAKNKYSAKA ASGLVSNVNT GEIVAMVSLP DFDPNNPREA NDPDRINRLT TGVYEMGSTF
KTLTLAMALD SGKATLNTLY DARGALRYGK FAIHDTHPLG RPITLAEVFT FSSNVGAARI
AIAQGVEAHK AFLKKVGQLD RLRTELPESA SPIVPKRWGE LNTITISFGH GVAVAPLQAV
MGINAMVNGG YLIPPTFLKR SEEDALKMAK RVVKKETSDK IRYLMRLNAE IGTARTADQI
AKGYYIGGKT GTSEKVINGR YAKKQVLNSF TAVLPADNPQ FQVLVMLDEP KALPETHGFI
TSGWNAVPTG GKVIERIAPL LGIEPRFDLP PPDRLILAAS KTAQ