| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3396 |
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| Symbol | murD |
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| ID | 4023908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3773615 |
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| End bp | 3775027 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637963601 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_570521 |
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| Protein GI | 91977862 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.291122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCCCG TAACCTCCTT CGCCGGGCAG TCCGTGGCGG TGTTCGGGCT CGGCGGGTCG
GGGCTGGCGA GCTGCCACGC GCTGCGCGCC GGCGGCGCCG AAGTGATCGC ATGCGACGAC
AATCTCGACC GCGTGGTGGA AGCGACGCAG GCAAATTTCA TCACCGCTGA CCTGCGCAGT
TTGCCGTGGG CCAATTTCGC TGCGCTGATC CTGACGCCCG GCGTGCCGCT GACGCATCCG
ACGCCGCATT GGAGCGTCCT GAAGGCACGC GAGGCCGGCG TCGAAGTGAT CGGCGATGTC
GAGCTGTTCT GCCGCGAACG GCGGCGGCAT GCGCCGGACT CGCCGTTCGT CGCCATCACC
GGCACCAACG GCAAGTCGAC CACCACCGCG CTGATCGCGC ATCTGATGCG CGAGGCCGGT
TACGACACCC AGATGGGCGG CAATATCGGC ACCGCGATTC TGTCGCTGGA GCCGCCGCGT
AGCGGCCGCG TCCATGTGAT CGAGATGTCG TCCTACCAGA TCGATCTGAC GCCCTCGCTC
GCTCCCACCG TCGGTATCCT GCTCAACGTC ACCGAAGACC ACATCGATCG CCACGGCACC
ATCGAGCACT ACGCCGCGGT GAAGGAGCGG CTGGTCGCCG GCGTGCAGGA CGGCGGCACG
GCGATCATCG GCGTCGATGA CGGCTTCGGC CGCGACGCCG CCGACCGGCT GGAGCGCGCC
GGCAAGCAGG TGGTGCGGAT TTCGGTGAAG CAACCGCTGG CCTCCGGCAT CACCGCCGAT
CATGAGACCA TTCGCAGCTC GGCCGGCGGC GCTTCACGCG AGATCGCGCG GCTCGGCGGC
ATCGGTTCGC TGCGCGGCCT GCACAACGCC CAGAACGCCG CCGCGGCGTC GGCGGCTGCA
TTGGCGCTCG GCGTCAGCGC CGATGCGTTG CAGAAGGGGC TGCGCAGCTT CCCGGGCCTC
GCGCACCGGA TGGAGCAGGT CGGCCGGCAA TCGAGCGGTG AGGGCGCCAC GCTGTTCGTC
AACGATTCCA AGGGCACCAA CGCCGACGCC ACCGCCAAGG CGCTGTCGTC GTTCGGCGAG
ATCTTCTGGA TCGCCGGCGG CAAGCCGAAG ACCGGTGGCA TCGAAAGCCT CGCCGAGTAC
TTCCCGCGCA TCCGCAAGGC GTATCTGATC GGCGAAGCGG CCGAGGAATT TGCCGCGACG
CTGGAGGGAA AGGTCGCTTA CGAGATCAGC GAGACGCTGG ACAACGCCGT GGCGGCTGCG
GCGCGCGATG CAGCGGCATC GGGATTGGCC GAGCCCGTGG TGCTGCTATC GCCGGCCTGT
GCTTCGTTCG ACCAGTTCCG CAATTTCGAG ATCCGCGGCA CCAGGTTCCG CGAACTGGTG
ACGGCACTGG ACGGTGTGAA ACCTGTGGCG TGA
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| Protein sequence | MIPVTSFAGQ SVAVFGLGGS GLASCHALRA GGAEVIACDD NLDRVVEATQ ANFITADLRS
LPWANFAALI LTPGVPLTHP TPHWSVLKAR EAGVEVIGDV ELFCRERRRH APDSPFVAIT
GTNGKSTTTA LIAHLMREAG YDTQMGGNIG TAILSLEPPR SGRVHVIEMS SYQIDLTPSL
APTVGILLNV TEDHIDRHGT IEHYAAVKER LVAGVQDGGT AIIGVDDGFG RDAADRLERA
GKQVVRISVK QPLASGITAD HETIRSSAGG ASREIARLGG IGSLRGLHNA QNAAAASAAA
LALGVSADAL QKGLRSFPGL AHRMEQVGRQ SSGEGATLFV NDSKGTNADA TAKALSSFGE
IFWIAGGKPK TGGIESLAEY FPRIRKAYLI GEAAEEFAAT LEGKVAYEIS ETLDNAVAAA
ARDAAASGLA EPVVLLSPAC ASFDQFRNFE IRGTRFRELV TALDGVKPVA
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