| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3380 |
|---|
| Symbol | |
|---|
| ID | 4023892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3751209 |
|---|
| End bp | 3752543 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637963585 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_570505 |
|---|
| Protein GI | 91977846 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.27624 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00175601 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | TTGCTTCTCT CCGCACAACC GCACCCCGGT CGGAACCAAC ACTGCATGCA CGGAATGACC
GGCAACAGCC GCACGATCGA CGCAGGTCGC CTCGACCTGC CGCCGTCGAA GCTGCTGCTG
TTGCTGCTCG TGCTGATGAA CGGCGCTGCG CCGATTGCGC TGTACATCTT CGTTCCGGCG
CTGCCGATCC TCGCCAGCGA TCTCGGCAGC GACATCTCGG TCGCGCAGAT GACGGTGTCG
CTCTACATGG TCGGGCTTGC GTGCTCGCAA CTGATCATGG GACCGCTGTC GGACCGGTTC
GGCCGCCGTC CGGTGCTGCT CGGCGGGCTG ATGCTGATGG TCGCGGCGAG CATCGGCTGC
ATCTTCGCGC AGACGCTGCC GCAACTGATC GCCGCGCGGT TCCTGCAGGC GCTCGGCGGC
GCCTCGGGCA TGGTGATCAG CCGCGCCATC ATCCGGGATC TGTACAGCCG CGACCGCGTC
GGCGGCATGA TCAGCCTGGT GATCGCGGTC ATGATGATCG CGCAGATGCT GAGCCCGCTG
TTCGGCGGCG TGATCGAGAC CGCGCTCGGC TGGCGCGCCA TCTTCTACGT CGTCACCGCC
GGCGCGATCA TCGTGACCGT CGCGATCGCG CTGGCGCTGC CGGAAACGCG CCGACGCGGC
GGGCCGACTG CGCCGGGCGG CTTTCGCGGC GATGTCGGCA GCCTGTTCAG GAGCCGCACC
TTCGTCGGCT ATGTGCTGTG CCAGGTGCTG GCGTCGGCGA TCATCTTCAC CTTTGCGGGC
GGCGGACCCT ACGTCGTGGT GACGCAGATG GGCCGCAGCA GCGCCGAATA CGGCGCGTGG
TTCGCGAGTT CGGGCTTCGC CTATCTGATC GGCAATCTGT TCTGCGTCAG GTTCTCGCCG
CGATACTCGC TCGACAGGCT GATCTGGTTC GGGCTCGCGC TGCAGATCGG CGGCGCGCTG
CTCAACGTGC TGTGGGGCAT GCTCGGATAC AATCAGGTTC CGAGCTGGCT GTTCATCACC
CACATGGTGA TCATGTTCGG CAACGCCAGC GTGATGGCGA ACGCCGCCGC CGCCGCGATC
AGCGTTCGGC CGCAGGCGGC CGGCACCGCG TCGGGGCTGA TGGGTTTCAC CCAGATGGGC
TTCGGCGCGC TGTGCTCGCA ATTCGGCGCC TGGCTCGGCG GCCATTTCGC CACGCCGCTG
CCGCTGAACA TCGCCGTCAT GGGCCTGGCG ATCGCCTGCG CATCGGCGAT GATCTTCCTG
GTCCCGCGCG GCAATCTCGT CGCCACCGAG GAGCTGATCG AACGGGCGGA AGGCGAAGAG
CCACCGGTGA TGTGA
|
|---|
| Protein sequence | MLLSAQPHPG RNQHCMHGMT GNSRTIDAGR LDLPPSKLLL LLLVLMNGAA PIALYIFVPA
LPILASDLGS DISVAQMTVS LYMVGLACSQ LIMGPLSDRF GRRPVLLGGL MLMVAASIGC
IFAQTLPQLI AARFLQALGG ASGMVISRAI IRDLYSRDRV GGMISLVIAV MMIAQMLSPL
FGGVIETALG WRAIFYVVTA GAIIVTVAIA LALPETRRRG GPTAPGGFRG DVGSLFRSRT
FVGYVLCQVL ASAIIFTFAG GGPYVVVTQM GRSSAEYGAW FASSGFAYLI GNLFCVRFSP
RYSLDRLIWF GLALQIGGAL LNVLWGMLGY NQVPSWLFIT HMVIMFGNAS VMANAAAAAI
SVRPQAAGTA SGLMGFTQMG FGALCSQFGA WLGGHFATPL PLNIAVMGLA IACASAMIFL
VPRGNLVATE ELIERAEGEE PPVM
|
|---|
| |