| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3335 |
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| Symbol | |
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| ID | 4023845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3695693 |
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| End bp | 3698077 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963539 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_570460 |
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| Protein GI | 91977801 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.364318 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGGAG CCAAGGCACC GAGGTCGCTG CGCGCAGAAG CGTCGCTCCG AACGTACAAT
GATCAGCTCG ACAGTTACTA CGGCCGCAAG GTTTCGGCGG TCGCCGGGAT GATCGCGGTG
GCGTCGATCG GCGGCGCCGA GGCGCAGCAA TCGAGCCTGC CCGCGGTGAC GGTCGATGCG
CCGGTGGCGC GGCCGCGCCC TGTGGCGGCG CAGCCGACGC CCGATCAAAT CCGTGCGCGC
ACCGCGTTGC GCCGTGCGGC GCGGCGCGCG CAGCCGGCTC AGGTGGCGCC GGTGCCGTTT
CCGAATGCCG GCGTGTTGTC GGCGGATCGC AACCCCTATG CGGATGCGGA TGCGCCCTAC
AAGGTCGACC GGCTGTCCGG CTCGAAGTTC ACCGAGCCGG TGCTGAACAC TCCGCGGACG
GTGACGGTGC TGAGCAAGGA GATTCTGCAG GACAAGAACG CGACCTCGCT GCGTGACGTG
GCGCGCTCCA CCGCCGGCGT GACGCTCGGC ACCGGCGAGG GCGGCAACGC CTTCGGCGAC
CGCTTCTTCA TCCGCGGCTT CGACGCCCGC AACGACGTCT TTATCGACGG CATCCGCGAT
CCGGCGGTCT CGATCCGCGA GAACTTCTTC ACCGAGCAGG TCGAAATCCT GCGTGGGCCT
GCCTCGACGC TTGCCGGACG CGGCACCGCT GGCGGCGCGA TCAACATCGT CACCAAGCAG
GCCTCGACGG AGGGCAATTT CACCAAGGCC GAGACCACAT TCGGTACCGA CGCCACCAGG
CGCGTCACGG TCGACGTCAA CCAGGTGATC AGCCCGACGC TGGCCGTGCG GTTCGACGGC
CTGTACCAGC AGGCCAACGT CGCCGGCCGC AACTATGTCT TCGATGACCG CTGGGGAACC
CTCGGGGCGA TCAAGTGGAC GCCGACCGAC GCCATCAAGA TCACCGCGAA CTACGTCCAC
ACCGATCTCA ATGGCCTGCC GGATTTCGGC GTGCCTTACA ACACCGCGCT GCGCCGGCCC
TCTACCAGCG TGAACGTGCC GCGCAACACC TATTACGGCT TCGTCAATCG CGACTTCCAG
AAGGCGCAGC AGGATTTCGG CACGCTGACC GGCGAATTCA ACATCACGCC CGACATCACG
CTGAGCAATC GCACCCGCGC CGCCCGCTCG GTGCTCGACT ACATCGGGAC GTTGCCGAGC
AACCCGACCG CCACCACGGT GTCGCTGGCG TCGCAGAGCC GCTATCAGGT CACCGACGTT
CTCGCCAACC AGACCGACCT GACCTACAAA TTCGATACCG GCCCGATCAA GCACGCGCTG
ATTACCGGCG CCGAGGTGTC GCAGGAAAAG GTGATGCGCG ACAACTATGC CGGGCTCTCC
TCGGAGCTGG CTGGCTTCCA GACCGGCGGC CGGATCACCG TGCCGCTGCT CGCGCCGCCG
AATCTGTTCG AGTTCTCCAG CGCGCCGCAG CGCGCTGGCA ACCCGACCAA TATCACGGTC
GACACCAAAT CGGTCTACGC GATCGAGACC GCCAACTACA ACGATTTTAT CATCGTCAAT
GGCGGGATTC GCTACGACGA TTACGACATC CGCGGCGTCA GCTCGACGGC GTCGAGCGGG
GTGCAGTCCG GAATGTTCAA CTACAATGCC GGCGTGGTGG TGAAGCCGCT GCCCTATGCC
AGCCTGTACT CGGCCTATGC GACCTCGTCG AACCCGGTCG GCGCCGAGCT CGATGCCTCG
GGTTCGGCCT ATGGCGGCCT CGTCGTCAGC AACGCCGTGT TCCAGGCGCT GACGCCCGAG
CAGAACAAGG CGGTCGAGGT CGGCACCAAA TGGGAGCTGT TCAACCGGCA CCTGCTGCTG
ACCGGCTCGC TGTTCCAGAC CGACAAGACC AACGCCCGGG AGACGTCCGG CAGCACCATC
ATCGGCGGAG CGGCCTATCG CGTCCGTGGC ATCGACCTCG AGGTGGCCGG CAAGATCACC
GACCGCTGGA GCGTGTTCGG CGGCCTGGTG CTGATGGAGA GCCAGGTCCT GCAATCGATC
GATGCGGCCC AGGTCGGCGC TCAACTCGCC AATATCGCGC ACCAGTCATT CAACCTGCTC
ACCAAATACA AGTTCGACGA CCATTGGGAA GTCGGCGGGC AGGCGACCTA CGCCTCGAAG
ATCTACGGCG GCACCTTCGG CGCCATCAAC GGCAACGTGC TGCCCGAACA TTGGCGGTTC
GATAGCTTCG TCGAGTTCAA GGTCGACAGG CACCTGACCG CCAAGCTGTC GGTCAACAAC
ATCCTCAACA CGACTTACTA CGACGCGTTC TATCGCAGCG CCTCGCCGTT CGTGTTCATC
GCGCCGGGTC GTTCGGTGCT GCTGACCCTG CGCGGCGCGC TCTGA
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| Protein sequence | MSGAKAPRSL RAEASLRTYN DQLDSYYGRK VSAVAGMIAV ASIGGAEAQQ SSLPAVTVDA
PVARPRPVAA QPTPDQIRAR TALRRAARRA QPAQVAPVPF PNAGVLSADR NPYADADAPY
KVDRLSGSKF TEPVLNTPRT VTVLSKEILQ DKNATSLRDV ARSTAGVTLG TGEGGNAFGD
RFFIRGFDAR NDVFIDGIRD PAVSIRENFF TEQVEILRGP ASTLAGRGTA GGAINIVTKQ
ASTEGNFTKA ETTFGTDATR RVTVDVNQVI SPTLAVRFDG LYQQANVAGR NYVFDDRWGT
LGAIKWTPTD AIKITANYVH TDLNGLPDFG VPYNTALRRP STSVNVPRNT YYGFVNRDFQ
KAQQDFGTLT GEFNITPDIT LSNRTRAARS VLDYIGTLPS NPTATTVSLA SQSRYQVTDV
LANQTDLTYK FDTGPIKHAL ITGAEVSQEK VMRDNYAGLS SELAGFQTGG RITVPLLAPP
NLFEFSSAPQ RAGNPTNITV DTKSVYAIET ANYNDFIIVN GGIRYDDYDI RGVSSTASSG
VQSGMFNYNA GVVVKPLPYA SLYSAYATSS NPVGAELDAS GSAYGGLVVS NAVFQALTPE
QNKAVEVGTK WELFNRHLLL TGSLFQTDKT NARETSGSTI IGGAAYRVRG IDLEVAGKIT
DRWSVFGGLV LMESQVLQSI DAAQVGAQLA NIAHQSFNLL TKYKFDDHWE VGGQATYASK
IYGGTFGAIN GNVLPEHWRF DSFVEFKVDR HLTAKLSVNN ILNTTYYDAF YRSASPFVFI
APGRSVLLTL RGAL
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