Gene RPD_3334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3334 
Symbol 
ID4023844 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3694979 
End bp3695668 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content62% 
IMG OID637963538 
Productputative hydroxylase 
Protein accessionYP_570459 
Protein GI91977800 
COG category[S] Function unknown 
COG ID[COG3128] Uncharacterized iron-regulated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0690816 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.437526 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGTTT GTATTCCCGA GATTCTGTCG AAACATGAGG TGACGGAATT CCGTCGCCTG 
ATGGACCAAG CGGACTGGGA GGATGGCCGC TCCACCGCCG GCGCGCAGTC GGCGATGGTC
AAACGCAACG AGCAACTGCC GCCGGACAGC GAACTCGCCC GCATGCTCGG CCGCCGCATC
GTGTCGGCCC TGACCGCCAA TCCGAAATTC GTCTCGGCGG CGGTGCCGTT GCAGATCTTC
CCGCCGCTGT TCAACCGCTA TGCCGCGTCG GGCAATCACC ATTTCGGTAT TCACGTCGAT
AATGCGGTGC GCGGCGACCC GCTCACCGGG CTGCGTATTC GCACCGACCT TTCAGTCACG
CTGTTCCTCG CGGAGCCCGA TGAATATGAC GGCGGCGAGC TGGTGGTCGA GGACACCTAC
GGGTCGCACG AGGTCAAGCT GCCGGCCGGG GACTGCGTTC TGTACCCGTC GTCCAGCCTG
CACATGGTGA CGCCCGTGAC CCGCGGAGCG CGGGTCGCGT CTTTTTTCTG GTTGCAGAGC
ATGATACGTG ATGCCCATGC GCGCAGCATG ATCTACGATC TCGACGGCGC CATTCAGGCT
CTGGTCGAGC GGCTGGGACG CGATGACCCT GAAACGGTCA AATTGACCGG TATTTATCAC
AACCTCATCC GGTACTGGGC CGACGTATGA
 
Protein sequence
MLVCIPEILS KHEVTEFRRL MDQADWEDGR STAGAQSAMV KRNEQLPPDS ELARMLGRRI 
VSALTANPKF VSAAVPLQIF PPLFNRYAAS GNHHFGIHVD NAVRGDPLTG LRIRTDLSVT
LFLAEPDEYD GGELVVEDTY GSHEVKLPAG DCVLYPSSSL HMVTPVTRGA RVASFFWLQS
MIRDAHARSM IYDLDGAIQA LVERLGRDDP ETVKLTGIYH NLIRYWADV