| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3315 |
|---|
| Symbol | |
|---|
| ID | 4023825 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3672201 |
|---|
| End bp | 3673412 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637963519 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_570440 |
|---|
| Protein GI | 91977781 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCCAC TCGAGGGCGT GAAGATCGTC GACATGACGT CGGTGCTGAT GGGGCCCTAT
GCGACCCAGA TGCTCGGCGA CTACGGCGCC GACGTGGTCA AGATCGAGGC CCCCGAAGGA
GATGTCACGC GGCAGATCGG GCCTGCGCGC CACCCCGACA TGGGTCCGGT GTTCCTCAAC
ACGAACCGCA ACAAGCGCAG CATCTGCCTC GACCTCAAGC ACCCTGCCGG CCGTGACGCC
GCGCTTCGAC TGATCGCGAC CGCCGATGTG CTGGTCTATA ATGTACGCCC GCAGGCGATG
GCGCGGCTGC GCCTCGGCTA CAACGAGGTC GCCGCGATCA ACCCGCGGTT GATCTATGCC
GGCGTATTCG GCTTCGGCCA GGATGGACCC TACGCGGCGA AGCCGGCTTA TGACGATCTG
ATCCAGGGCG CCACCGCGCT GCCGTCGCTC AACGCCCGCG TCGGCGACGG CACGCCGCGC
TACGTGCCGA ACGCGCTGGT CGATCGTATT GTCGGTCTCA CCGCCGTTGG AGCGATCTGC
GCCAGCCTGG TGCATCGCGA TCGGACCGGG CAGGGCCAGC GCGTCGATAT TCCGATGTTC
GAAACGATGG CGAGCTTCGT GATGGGCGAT CACCTCGGCG GGCTCACTTA CGAGCCGCCG
CTCGATCGTG GCGGCTATGC GCGGCATCTG TCGCCGGACC GGCGTCCGTA CCAGACCGCA
GACGGTTACA TCTGCGCGAT GGTCTACAAC GACAAGCAAT GGTTCAGTTT CCTGCGCGCG
GTCGGCCGCG ACGATCTGCT GGCCGACGAG CGCTACACCA GCTTCGCCAG GCGCGCGGTC
AATATCGACG TGGTCTATGC CGAGCTGGCG CGGATTTTTC AGACGCGCAC CACGGCGCAA
TGGACCCGGC TGCTCGACGA AGCCGATGTT CCGGCGATGC GGATGCACGA CCTCGAGAGC
ATTCTCGACG ATCCGCATCT GGTCGCGACT GATTTCTTCG CTGTGGTCGA GCATCCGAGC
GAAGGCGCAA TCCGCGACAT GAAAGTGTCG GCGACGTTCT CGGCAACGCC AGTTGAACGC
CACCGCTTCG CGCCTCGGCT CGGCGAGCAG GGCGCGGAGG TGCTGCGCGA AGCGGGATAC
AGCGCCGACG AGATCGCGGC GCTGGCGGGA TGCGGTGCGT TGAAGCTGCC CGCAGCGACT
GGACAGAGTT GA
|
|---|
| Protein sequence | MGPLEGVKIV DMTSVLMGPY ATQMLGDYGA DVVKIEAPEG DVTRQIGPAR HPDMGPVFLN
TNRNKRSICL DLKHPAGRDA ALRLIATADV LVYNVRPQAM ARLRLGYNEV AAINPRLIYA
GVFGFGQDGP YAAKPAYDDL IQGATALPSL NARVGDGTPR YVPNALVDRI VGLTAVGAIC
ASLVHRDRTG QGQRVDIPMF ETMASFVMGD HLGGLTYEPP LDRGGYARHL SPDRRPYQTA
DGYICAMVYN DKQWFSFLRA VGRDDLLADE RYTSFARRAV NIDVVYAELA RIFQTRTTAQ
WTRLLDEADV PAMRMHDLES ILDDPHLVAT DFFAVVEHPS EGAIRDMKVS ATFSATPVER
HRFAPRLGEQ GAEVLREAGY SADEIAALAG CGALKLPAAT GQS
|
|---|
| |